Jens Luebeck

Jens Luebeck

University of California, San Diego

H-index: 17

North America-United States

Contact Jens Luebeck

About Jens Luebeck

Jens Luebeck, With an exceptional h-index of 17 and a recent h-index of 17 (since 2020), a distinguished researcher at University of California, San Diego, specializes in the field of ecDNA, bioinformatics, computational biology, gene amplification, cancer genomics.

His recent articles reflect a diverse array of research interests and contributions to the field:

Oncogenic extrachromosomal DNA identification using whole-genome sequencing from formalin-fixed glioblastomas

CoRAL accurately resolves extrachromosomal DNA genome structures with long-read sequencing

Immortalization and transformation of primary cells mediated by engineered ecDNAs

Breakage fusion bridge cycles drive high oncogene copy number, but not intratumoral genetic heterogeneity or rapid cancer genome change

Circular extrachromosomal DNA promotes tumor heterogeneity in high-risk medulloblastoma

Coordinated inheritance of extrachromosomal DNA species in human cancer cells

Epigenetic dysregulation from chromosomal transit in micronuclei

Integrated analysis of single-cell chromatin state and transcriptome identified common vulnerability despite glioblastoma heterogeneity

Jens Luebeck Information

University	University of California, San Diego
Position	___
Citations(all)	1925
Citations(since 2020)	1821
Cited By	541
hIndex(all)	17
hIndex(since 2020)	17
i10Index(all)	18
i10Index(since 2020)	18
Email	Access Email
University Profile Page	University of California, San Diego
Google Scholar	View Google Scholar Profile

Jens Luebeck Skills & Research Interests

ecDNA

bioinformatics

computational biology

gene amplification

cancer genomics

Top articles of Jens Luebeck

Oncogenic extrachromosomal DNA identification using whole-genome sequencing from formalin-fixed glioblastomas

Annals of Oncology

2024/3/15

Imran Noorani

H-Index: 13

Jens Luebeck

H-Index: 7

Mark Fabian

H-Index: 4

James Nicoll

H-Index: 40

Delphine Boche

H-Index: 29

Vineet Bafna

H-Index: 44

CoRAL accurately resolves extrachromosomal DNA genome structures with long-read sequencing

bioRxiv

2024

Kaiyuan Zhu

H-Index: 3

Jens Luebeck

H-Index: 7

Hyerim Yi

H-Index: 5

King L Hung

H-Index: 3

Ivy Tsz-Lo Wong

H-Index: 1

Shu Zhang

H-Index: 14

Vineet Bafna

H-Index: 44

Immortalization and transformation of primary cells mediated by engineered ecDNAs

bioRxiv

2023

Rui Gao

H-Index: 5

Kevin Chen

H-Index: 2

Jens Luebeck

H-Index: 7

Vineet Bafna

H-Index: 44

Andrea Ventura

H-Index: 2

Breakage fusion bridge cycles drive high oncogene copy number, but not intratumoral genetic heterogeneity or rapid cancer genome change

bioRxiv

2023/12/13

Siavash Raeisi Dehkordi

H-Index: 1

Ivy Tsz-Lo Wong

H-Index: 1

Jens Luebeck

H-Index: 7

Kaiyuan Zhu

H-Index: 3

Guanghui Xu

H-Index: 2

Ann Caplin

H-Index: 2

Feng Yue

H-Index: 23

Vineet Bafna

H-Index: 44

Circular extrachromosomal DNA promotes tumor heterogeneity in high-risk medulloblastoma

Nature genetics

2023/12

Jens Luebeck

H-Index: 7

Ivy Tsz-Lo Wong

H-Index: 1

Deobrat Dixit

H-Index: 18

King L Hung

H-Index: 3

Ashutosh Tiwari

H-Index: 5

Caitlin Guccione

H-Index: 1

Aditi Dutta

H-Index: 1

Xinlian Zhang

H-Index: 8

Hannah Carter

H-Index: 10

Vineet Bafna

H-Index: 44

Lukas Chavez

H-Index: 36

Coordinated inheritance of extrachromosomal DNA species in human cancer cells

bioRxiv

2023/7/19

King L Hung

H-Index: 3

Ivy Tsz-Lo Wong

H-Index: 1

Jens Luebeck

H-Index: 7

Rui Li

H-Index: 2

Vineet Bafna

H-Index: 44

Benjamin Werner

H-Index: 11

Epigenetic dysregulation from chromosomal transit in micronuclei

Nature

2023/7/6

Ramya Raviram

H-Index: 18

Jens Luebeck

H-Index: 7

Seongmin Choi

H-Index: 7

Andrew Mcpherson

H-Index: 20

Vivek Mittal

H-Index: 1

Zuzana Storchova

H-Index: 23

Enrico Gratton

H-Index: 61

Peter Ly

H-Index: 12

Vineet Bafna

H-Index: 44

Integrated analysis of single-cell chromatin state and transcriptome identified common vulnerability despite glioblastoma heterogeneity

Proceedings of the National Academy of Sciences

2023/5/16

Ramya Raviram

H-Index: 18

Anugraha Raman

H-Index: 2

Kai Zhang

H-Index: 48

Chenxu Zhu

H-Index: 10

Jens Luebeck

H-Index: 7

Jee Yun Han

H-Index: 10

Xiaomeng Hou

H-Index: 12

Zhen Ye

H-Index: 8

Rongxin Fang

H-Index: 14

Vineet Bafna

H-Index: 44

Bing Ren

H-Index: 0

Transcriptional immune suppression and upregulation of double stranded DNA damage and repair repertoires in ecDNA-containing tumors

bioRxiv

2023/4/24

Se-Young Jo

H-Index: 5

Jens Luebeck

H-Index: 7

Sihan Wu

H-Index: 17

Vineet Bafna

H-Index: 44

Extrachromosomal DNA in the cancerous transformation of Barrett’s oesophagus

Nature

2023/4/27

Jens Luebeck

H-Index: 7

Xiaohong Li

H-Index: 2

Hoon Kim

H-Index: 2

Yudou He

H-Index: 5

Brian J Reid

H-Index: 27

Sihan Wu

H-Index: 17

Vineet Bafna

H-Index: 44

METHODS AND COMPOSITIONS FOR DETECTING ecDNA

2022/11/17

Targeted profiling of human extrachromosomal DNA by CRISPR-CATCH

Nature genetics

2022/11

King L Hung

H-Index: 3

Jens Luebeck

H-Index: 7

Rui Li

H-Index: 2

Ivy Tsz-Lo Wong

H-Index: 1

Gatien Moriceau

H-Index: 17

Xiao Zhang

H-Index: 4

Chris Bailey

H-Index: 18

Wenting Yang

H-Index: 7

Christina Curtis

H-Index: 34

Vineet Bafna

H-Index: 44

FastViFi: Fast and accurate detection of (Hybrid) Viral DNA and RNA

NAR Genomics and Bioinformatics

2022/6

Sara Javadzadeh

H-Index: 1

Nam Nguyen

H-Index: 8

Shahab Sarmashghi

H-Index: 2

Jens Luebeck

H-Index: 7

Jingbo Shang

H-Index: 16

Vineet Bafna

H-Index: 44

Plasticity of Extrachromosomal and Intrachromosomal BRAF Amplifications in Overcoming Targeted Therapy Dosage Challenges

Cancer discovery

2021/1/1

Kai Song

H-Index: 7

Jens Luebeck

H-Index: 7

Gatien Moriceau

H-Index: 17

Salwan Alhani

H-Index: 1

Amelia Palermo

H-Index: 10

Vineet Bafna

H-Index: 44

Mapping clustered mutations in cancer reveals APOBEC3 mutagenesis of ecDNA

Nature

2022/2/17

Jens Luebeck

H-Index: 7

Mia Petljak

H-Index: 9

Mark Barnes

H-Index: 8

Nischalan Pillay

H-Index: 22

Vineet Bafna

H-Index: 44

Extrachromosomal DNA in HPV-Mediated Oropharyngeal Cancer Drives Diverse Oncogene Transcription

Clinical Cancer Research

2021/12/15

Nam Nguyen

H-Index: 8

Jens Luebeck

H-Index: 7

Andrey Finegersh

H-Index: 12

Theresa Guo

H-Index: 20

Bharat Panuganti

H-Index: 8

Vineet Bafna

H-Index: 44

Joseph Califano

H-Index: 50

EcDNA hubs drive cooperative intermolecular oncogene expression

Nature

2021/12

King L Hung

H-Index: 3

Kathryn E Yost

H-Index: 10

Jens Luebeck

H-Index: 7

Ivy Tsz-Lo Wong

H-Index: 1

Sihan Wu

H-Index: 17

Katerina Kraft

H-Index: 8

Jun Tang

H-Index: 4

John C Rose

H-Index: 6

Rui Li

H-Index: 2

Vineet Bafna

H-Index: 44

Zhe Liu

H-Index: 2

FaNDOM: Fast nested distance-based seeding of optical maps

Patterns

2021/5/14

Siavash Raeisi Dehkordi

H-Index: 1

Jens Luebeck

H-Index: 7

Vineet Bafna

H-Index: 44

Reconstructing and Profiling Extrachromosomal DNA

2021

Extrachromosomal DNA is associated with oncogene amplification and poor outcome across multiple cancers

Nature genetics

2020/9

Hoon Kim

H-Index: 2

Sihan Wu

H-Index: 17

Jens Luebeck

H-Index: 7

Jihe Liu

H-Index: 7

Vineet Bafna

H-Index: 44

See List of Professors in Jens Luebeck University(University of California, San Diego)

Co-Authors

H-index: 149

Howard Y. Chang — Howard Y. Chang
Stanford University

Visit Howard Y. Chang Page

H-index: 110

Paul Mischel — Paul Mischel
Stanford University

Visit Paul Mischel Page

H-index: 106

Trey Ideker — Trey Ideker
University of California, San Diego

Visit Trey Ideker Page

H-index: 78

Ludmil B. Alexandrov — Ludmil B. Alexandrov
University of California, San Diego

Visit Ludmil B. Alexandrov Page

H-index: 76

Vineet Bafna — Vineet Bafna
University of California, San Diego

Visit Vineet Bafna Page

H-index: 54

Prashant Mali — Prashant Mali
University of California, San Diego

Visit Prashant Mali Page

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