Jason Papin
University of Virginia
H-index: 55
North America-United States
Top articles of Jason Papin
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
Identifying metabolic adaptations characteristic of cardiotoxicity using paired transcriptomics and metabolomics data integrated with a computational model of heart metabolism | PLOS Computational Biology | Bonnie V Dougherty Connor J Moore Kristopher D Rawls Matthew L Jenior Bryan Chun | 2024/2/29 |
Clostridioides difficile-mucus interactions encompass shifts in gene expression, metabolism, and biofilm formation | bioRxiv | Kathleen L Furtado Lucas Plott Matthew Markovetz Deborah Powers Hao Wang | 2024/2/1 |
Spatial transcriptome-guided multi-scale framework connects P. aeruginosa metabolic states to oxidative stress biofilm microenvironment | PLOS Computational Biology | Tracy J Kuper Mohammad Mazharul Islam Shayn M Peirce-Cottler Jason A Papin Roseanne M Ford | 2024/4/26 |
standard-GEM: standardization of open-source genome-scale metabolic models | Andreas Dräger Anton Mihail Eivind Almaas Rui Benfeitas Sara Benito-Vaquerizo | 2023/3/23 | |
Metabolic modeling of sex-specific liver tissue suggests mechanism of differences in toxicological responses | PLOS Computational Biology | Connor J Moore Christopher P Holstege Jason A Papin | 2023/8/21 |
The blossoming of methods and software in computational biology | Feilim Mac Gabhann Virginia E Pitzer Jason A Papin | 2023/8/17 | |
Metabolic Network Models of the Gardnerella Pangenome Identify Key Interactions with the Vaginal Environment | Msystems | Lillian R Dillard Emma M Glass Amanda L Lewis Krystal Thomas-White Jason A Papin | 2023/2/23 |
A computational model of Pseudomonas syringae metabolism unveils a role for branched-chain amino acids in Arabidopsis leaf colonization | PLOS Computational Biology | Philip J Tubergen Greg Medlock Anni Moore Xiaomu Zhang Jason A Papin | 2023/12/27 |
Reconstructor: a COBRApy compatible tool for automated genome-scale metabolic network reconstruction with parsimonious flux-based gap-filling | Bioinformatics | Matthew L Jenior Emma M Glass Jason A Papin | 2023/6/1 |
Identifying metabolic shifts in Crohn's disease using'omics-driven contextualized computational metabolic network models | Scientific Reports | Philip Fernandes Yash Sharma Fatima Zulqarnain Brooklyn McGrew Aman Shrivastava | 2023/1/5 |
Systems-ecology designed bacterial consortium protects from severe Clostridioides difficile infection | bioRxiv | Matthew L Jenior Jhansi L Leslie Glynis L Kolling Laurie Archbald-Pannone Deborah A Powers | 2023 |
Network analysis of toxin production in Clostridioides difficile identifies key metabolic dependencies | PLOS Computational Biology | Deborah A Powers Matthew L Jenior Glynis L Kolling Jason A Papin | 2023/4/26 |
Model-driven characterization of functional diversity of Pseudomonas aeruginosa clinical isolates with broadly representative phenotypes | bioRxiv | Mohammad Mazharul Islam Glynis L Kolling Emma M Glass Joanna B Goldberg Jason A Papin | 2023/10/10 |
New perspectives into the vaginal microbiome with systems biology | Christina Y Lee Lillian R Dillard Jason A Papin Kelly B Arnold | 2023/4/1 | |
Transcriptome-guided metabolic network analysis reveals rearrangements of carbon flux distribution in Neisseria gonorrhoeae during neutrophil co-culture | Msystems | Aimee D Potter Christopher M Baiocco Jason A Papin Alison K Criss | 2023/8/31 |
Advancing code sharing in the computational biology community | Lauren Cadwallader Feilim Mac Gabhann Jason Papin Virginia E Pitzer | 2022/6/2 | |
Physiological niche informs evolution of metabolic function and corresponding drug targets of pathobionts | bioRxiv | Emma M Glass Lillian R Dillard Andrew S Warren Jason A Papin | 2022/11/13 |
Fecal sphingolipids predict parenteral nutrition–associated cholestasis in the neonatal intensive care unit | Journal of Parenteral and Enteral Nutrition | Thomas J Moutinho Deborah A Powers Gabriel F Hanson Shira Levy Rajiv Baveja | 2022/11 |
Comparative analyses of parasites with a comprehensive database of genome-scale metabolic models | PLoS computational biology | Maureen A Carey Gregory L Medlock Michał Stolarczyk William A Petri Jr Jennifer L Guler | 2022/2/23 |
Quantifying cumulative phenotypic and genomic evidence for procedural generation of metabolic network reconstructions | PLoS computational biology | Thomas J Moutinho Jr Benjamin C Neubert Matthew L Jenior Jason A Papin | 2022/2/7 |
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