Handuo Shi

Handuo Shi

Stanford University

H-index: 22

North America-United States

About Handuo Shi

Handuo Shi, With an exceptional h-index of 22 and a recent h-index of 19 (since 2020), a distinguished researcher at Stanford University, specializes in the field of Quantitative biology, microbiology.

His recent articles reflect a diverse array of research interests and contributions to the field:

Profiling the human intestinal environment under physiological conditions

Previously uncharacterized rectangular bacterial structures in the dolphin mouth

Physiological and regulatory convergence between osmotic and nutrient stress responses in microbes

Bacterial cell widening alters periplasmic size and activates envelope stress responses

Modulation of bacterial cell size and growth rate via activation of a cell envelope stress response

Optimization of the 16S rRNA sequencing analysis pipeline for studying in vitro communities of gut commensals

Profiling of the human intestinal microbiome and bile acids under physiologic conditions using an ingestible sampling device

Multiple conserved states characterize the twist landscape of the bacterial actin homolog MreB

Handuo Shi Information

University

Position

___

Citations(all)

2105

Citations(since 2020)

1624

Cited By

1136

hIndex(all)

22

hIndex(since 2020)

19

i10Index(all)

24

i10Index(since 2020)

21

Email

University Profile Page

Stanford University

Google Scholar

View Google Scholar Profile

Handuo Shi Skills & Research Interests

Quantitative biology

microbiology

Top articles of Handuo Shi

Title

Journal

Author(s)

Publication Date

Profiling the human intestinal environment under physiological conditions

Nature

Dari Shalon

Rebecca Neal Culver

Jessica A Grembi

Jacob Folz

Peter V Treit

...

2023/5/18

Previously uncharacterized rectangular bacterial structures in the dolphin mouth

Nature Communications

Natasha K Dudek

Jesus G Galaz-Montoya

Handuo Shi

Megan Mayer

Cristina Danita

...

2023/4/13

Physiological and regulatory convergence between osmotic and nutrient stress responses in microbes

Adrienne M Brauer

Handuo Shi

Petra Anne Levin

Kerwyn Casey Huang

2023/4/1

Bacterial cell widening alters periplasmic size and activates envelope stress responses

bioRxiv

Matylda Zietek

Amanda Miguel

Iskander Khusainov

Handuo Shi

Abir T Asmar

...

2022/7/27

Modulation of bacterial cell size and growth rate via activation of a cell envelope stress response

bioRxiv

Amanda Miguel

Matylda Zietek

Handuo Shi

Anna Sueki

Lisa Maier

...

2022/7/27

Optimization of the 16S rRNA sequencing analysis pipeline for studying in vitro communities of gut commensals

Iscience

Arianna I Celis

Andrés Aranda-Díaz

Rebecca Culver

Katherine Xue

David Relman

...

2022/4/15

Profiling of the human intestinal microbiome and bile acids under physiologic conditions using an ingestible sampling device

bioRxiv

Dari Shalon

Rebecca Neal Culver

Jessica A Grembi

Jacob Folz

Peter Treit

...

2022/1/20

Multiple conserved states characterize the twist landscape of the bacterial actin homolog MreB

Computational and Structural Biotechnology Journal

Benjamin D Knapp

Michael D Ward

Gregory R Bowman

Handuo Shi

Kerwyn Casey Huang

2022/1/1

Morphological and transcriptional responses to CRISPRi knockdown of essential genes in Escherichia coli

MBio

Melanie R Silvis

Manohary Rajendram

Handuo Shi

Hendrik Osadnik

Andrew N Gray

...

2021/10/26

Hyperosmotic shock transiently accelerates constriction rate in Escherichia coli

Frontiers in Microbiology

Jiawei Sun

Handuo Shi

Kerwyn Casey Huang

2021/8/13

Starvation induces shrinkage of the bacterial cytoplasm

Proceedings of the National Academy of Sciences

Handuo Shi

Corey S Westfall

Jesse Kao

Pascal D Odermatt

Sarah E Anderson

...

2021/6/15

Precise regulation of the relative rates of surface area and volume synthesis in bacterial cells growing in dynamic environments

Nature Communications

Handuo Shi

Yan Hu

Pascal D Odermatt

Carlos G Gonzalez

Lichao Zhang

...

2021/3/30

The inner membrane protein YhdP modulates the rate of anterograde phospholipid flow in Escherichia coli

Proceedings of the National Academy of Sciences

Jacqueline Grimm

Handuo Shi

Wei Wang

Angela M Mitchell

Ned S Wingreen

...

2020/10/27

Environmental and physiological factors affecting high-throughput measurements of bacterial growth

Archives of Environmental Contamination and Toxicology

J Bayo

S Moreno-Grau

MJ Martinez

J Moreno

JM Angosto

...

2001/8

AimB is a small protein regulator of cell size and MreB assembly

Biophysical Journal

John N Werner

Handuo Shi

Jen Hsin

Kerwyn Casey Huang

Zemer Gitai

...

2020/8/4

Klebsiella michiganensis transmission enhances resistance to Enterobacteriaceae gut invasion by nutrition competition

Nature microbiology

Rita A Oliveira

Katharine M Ng

Margarida B Correia

Vitor Cabral

Handuo Shi

...

2020/4

How to (un) twist a filament

Microbiology

Handuo Shi

2020/3/19

Pictures of Tongues Sticking Out

Handuo Shi

Kerwyn Casey Huang

2020/11/1

Chiral twisting in a bacterial cytoskeletal polymer affects filament size and orientation

Nature communications

Handuo Shi

David A Quint

Gregory M Grason

Ajay Gopinathan

Kerwyn Casey Huang

2020/3/16

See List of Professors in Handuo Shi University(Stanford University)

Co-Authors

H-index: 61
Kerwyn Casey Huang

Kerwyn Casey Huang

Stanford University

H-index: 59
Lei (Stanley) Qi

Lei (Stanley) Qi

Stanford University

H-index: 18
Jason M. Peters

Jason M. Peters

University of Wisconsin-Madison

H-index: 11
Alexandre Colavin

Alexandre Colavin

Stanford University

H-index: 9
Tomasz Czarny

Tomasz Czarny

University of Toronto

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