Giovanni Bussi
Scuola Internazionale Superiore di Studi Avanzati
H-index: 47
Europe-Italy
Top articles of Giovanni Bussi
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
Molecular simulations to investigate the impact of N6-methylation in RNA recognition: Improving accuracy and precision of binding free energy prediction | arXiv preprint arXiv:2404.14821 | Valerio Piomponi Miroslav Krepl Jiri Sponer Giovanni Bussi | 2024/4/23 |
RNA Dynamics from Experimental and Computational Approaches | arXiv preprint arXiv:2404.02789 | Giovanni Bussi Massimiliano Bonomi Paraskevi Gkeka Michael Sattler Hashim M Al-Hashimi | 2024/4/3 |
Molecular dynamics simulations reveal the parallel stranded d (GGGA) 3GGG DNA quadruplex folds via multiple paths from a coil-like ensemble | International Journal of Biological Macromolecules | Pavlína Pokorná Vojtěch Mlýnský Giovanni Bussi Jiří Šponer Petr Stadlbauer | 2024/3/1 |
Boosting Ensemble Refinement with Transferable Force-Field Corrections: Synergistic Optimization for Molecular Simulations | The Journal of Physical Chemistry Letters | Ivan Gilardoni Thorben Fröhlking Giovanni Bussi | 2024/1/25 |
Integrating experimental data with molecular simulations to investigate RNA structural dynamics | Mattia Bernetti Giovanni Bussi | 2023/2/1 | |
Molecular dynamics simulations of chemically modified ribonucleotides | Valerio Piomponi Mattia Bernetti Giovanni Bussi | 2023/11/4 | |
Molecular dynamics simulations with grand-canonical reweighting suggest cooperativity effects in RNA structure probing experiments | Journal of chemical theory and computation | Nicola Calonaci Mattia Bernetti Alisha Jones Michael Sattler Giovanni Bussi | 2023/6/8 |
Simultaneous refinement of molecular dynamics ensembles and forward models using experimental data | The Journal of Chemical Physics | Thorben Fröhlking Mattia Bernetti Giovanni Bussi | 2023/6/7 |
Atomistic Picture of Opening–Closing Dynamics of DNA Holliday Junction Obtained by Molecular Simulations | Journal of Chemical Information and Modeling | Zhengyue Zhang Jiri Sponer Giovanni Bussi Vojtech Mlynsky Petr Sulc | 2023/4/26 |
Unraveling disease mechanisms using molecular modeling of bio-interfaces | Biophysical Journal | Isabell Louise Grothaus Giovanni Bussi Janine Kirstein Susan Köppen Lucio Colombi Ciacchi | 2023/2/10 |
Toward convergence in folding simulations of RNA tetraloops: Comparison of enhanced sampling techniques and effects of force field modifications | Journal of Chemical Theory and Computation | Vojtech Mlynsky Michal Janeček Petra Kuhrova Thorben Frohlking Michal Otyepka | 2022/4/1 |
Biomotors, viral assembly, and RNA nanobiotechnology: Current achievements and future directions | Lewis Rolband Damian Beasock Yang Wang Yao-Gen Shu Jonathan D Dinman | 2022/1/1 | |
Exploration, Representation, and Rationalization of the Conformational Phase Space of N-Glycans | Journal of Chemical Information and Modeling | Isabell Louise Grothaus Giovanni Bussi Lucio Colombi Ciacchi | 2022/9 |
Molecular states and spin crossover of hemin studied by DNA origami enabled single-molecule surface-enhanced Raman scattering | Nanoscale | Anushree Dutta Kosti Tapio Antonio Suma Amr Mostafa Yuya Kanehira | 2022 |
Molecular Simulations Matching Denaturation Experiments for N6-Methyladenosine | ACS central science | Valerio Piomponi Thorben Fröhlking Mattia Bernetti Giovanni Bussi | 2022/8/3 |
Sampling globally and locally correct RNA 3D structures using ERNWIN, SPQR and experimental SAXS data | bioRxiv | Bernhard C Thiel Giovanni Bussi Simón Poblete Ivo L Hofacker | 2022 |
Adding alchemical variables to metadynamics to enhance sampling in free energy calculations | arXiv preprint arXiv:2206.01329 | Wei-Tse Hsu Valerio Piomponi Pascal T Merz Giovanni Bussi Michael R Shirts | 2022/6/2 |
Molecular Dynamics of Solids at Constant Pressure and Stress Using Anisotropic Stochastic Cell Rescaling | Applied Sciences | Vittorio Del Tatto Paolo Raiteri Mattia Bernetti Giovanni Bussi | 2022/1 |
Automatic learning of hydrogen-bond fixes in an AMBER RNA force field | Journal of Chemical Theory and Computation | Thorben Fröhlking Vojtěch Mlýnský Michal Janeček Petra Kührová Miroslav Krepl | 2022/6 |
Comparing state-of-the-art approaches to back-calculate SAXS spectra from atomistic molecular dynamics simulations | The European Physical Journal B | Mattia Bernetti Giovanni Bussi | 2021/9 |
Co-Authors
