Gary Bader

Gary Bader

University of Toronto

H-index: 111

North America-Canada

About Gary Bader

Gary Bader, With an exceptional h-index of 111 and a recent h-index of 83 (since 2020), a distinguished researcher at University of Toronto, specializes in the field of Computational Biology, Systems Biology.

His recent articles reflect a diverse array of research interests and contributions to the field:

A193 DECIPHERING THE INFLUENCE OF CROHN’S DISEASE-ASSOCIATED GENETIC RISK FACTOR, NOD2 IN INTESTINAL FIBRO-STENOSIS

PRMT5 is required for full-length HTT expression by repressing multiple proximal intronic polyadenylation sites

Integrated transcriptomics uncovers an enhanced association between the prion protein gene expression and vesicle dynamics signatures in glioblastomas

Single-cell analysis of an engineered organoid-based model of pancreatic cancer identifies hypoxia as a contributing factor in the determination of transcriptional subtypes

Metformin reduces the clonal fitness of Dnmt3aR878H hematopoietic stem and progenitor cells by reversing their aberrant metabolic and epigenetic state

Single-cell and spatial transcriptomics characterisation of the immunological landscape in the healthy and PSC human liver

WangLab at MEDIQA-M3G 2024: Multimodal Medical Answer Generation using Large Language Models

Deep Lineage: Single-Cell Lineage Tracing and Fate Inference Using Deep Learning

Gary Bader Information

University

Position

Professor of Molecular Genetics and Computer Science The Donnelly Centre

Citations(all)

82268

Citations(since 2020)

38428

Cited By

57995

hIndex(all)

111

hIndex(since 2020)

83

i10Index(all)

248

i10Index(since 2020)

226

Email

University Profile Page

University of Toronto

Google Scholar

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Gary Bader Skills & Research Interests

Computational Biology

Systems Biology

Top articles of Gary Bader

Title

Journal

Author(s)

Publication Date

A193 DECIPHERING THE INFLUENCE OF CROHN’S DISEASE-ASSOCIATED GENETIC RISK FACTOR, NOD2 IN INTESTINAL FIBRO-STENOSIS

Journal of the Canadian Association of Gastroenterology

T Mukherjee

S Patel

J Yadav

A Ayyaz

D Tsang

...

2024/3/1

PRMT5 is required for full-length HTT expression by repressing multiple proximal intronic polyadenylation sites

bioRxiv

MONA ALQAZZAZ

Felipe Eduardo Ciamponi Sr

Jolene Caifeng Ho

Maxim I Maron

Manisha Yadav

...

2024

Integrated transcriptomics uncovers an enhanced association between the prion protein gene expression and vesicle dynamics signatures in glioblastomas

BMC cancer

Jacqueline Marcia Boccacino

Rafael dos Santos Peixoto

Camila Felix de Lima Fernandes

Giovanni Cangiano

Paula Rodrigues Sola

...

2024/2/13

Single-cell analysis of an engineered organoid-based model of pancreatic cancer identifies hypoxia as a contributing factor in the determination of transcriptional subtypes

bioRxiv

Natalie Landon-Brace

Brendan T Innes

Simon Latour

Jose L Cadavid

Ileana L Co

...

2024

Metformin reduces the clonal fitness of Dnmt3aR878H hematopoietic stem and progenitor cells by reversing their aberrant metabolic and epigenetic state

Steven Chan

Mohsen Hosseini

Veronique Voisin

Ali Chegini

Angelica Varesi

...

2024/2/6

Single-cell and spatial transcriptomics characterisation of the immunological landscape in the healthy and PSC human liver

Journal of Hepatology

Tallulah S Andrews

Diana Nakib

Catia T Perciani

Xue Zhong Ma

Lewis Liu

...

2024/1/8

WangLab at MEDIQA-M3G 2024: Multimodal Medical Answer Generation using Large Language Models

arXiv preprint arXiv:2404.14567

Ronald Xie

Steven Palayew

Augustin Toma

Gary Bader

Bo Wang

2024/4/22

Deep Lineage: Single-Cell Lineage Tracing and Fate Inference Using Deep Learning

bioRxiv

Mehrshad Sadria

Allen Zhang

Gary Bader

2024

The multimodality cell segmentation challenge: toward universal solutions

Nature methods

Jun Ma

Ronald Xie

Shamini Ayyadhury

Cheng Ge

Anubha Gupta

...

2024/3/26

Maester: masked autoencoder guided segmentation at pixel resolution for accurate, self-supervised subcellular structure recognition

Ronald Xie

Kuan Pang

Gary D Bader

Bo Wang

2023

Genotyping SARS-CoV-2 Variants Using Ratiometric Nucleic Acid Barcode Panels

Analytical Chemistry

Hannah N Kozlowski

Ayden Malekjahani

Vanessa YC Li

Ayokunle A Lekuti

Stephen Perusini

...

2023/3/31

Multi-scale systems genomics analysis predicts pathways, cell types, and drug targets involved in normative variation in peri-adolescent human cognition

Cerebral Cortex

Shraddha Pai

Shirley Hui

Philipp Weber

Soumil Narayan

Owen Whitley

...

2023/7/1

Adversarial training improves model interpretability in single-cell RNA-seq analysis

Bioinformatics Advances

Mehrshad Sadria

Anita Layton

Gary D Bader

2023/1/1

Annual Meeting of the Canadian Association for the Study of the Liver (CASL), the Canadian Network on Hepatitis C (CANHEPC) and the Canadian Association of Hepatology Nurses …

Canadian Liver Journal

M Akl

L Li

R Baccetto

S Phanse

Q Zhang

...

2023/3/11

Robust segregation of donor and recipient cells from single-cell RNA-sequencing of transplant samples

Frontiers in Transplantation

Gavin W Wilson

Allen Duong

Sajad Moshkelgosha

Gary Bader

Shaf Keshavjee

...

2023/6/12

A rat liver cell atlas reveals intrahepatic myeloid heterogeneity

Iscience

Delaram Pouyabahar

Sai W Chung

Olivia I Pezzutti

Catia T Perciani

Xinle Wang

...

2023/11/17

Cytoscape. js 2023 update: A graph theory library for visualization and analysis

Bioinformatics

Max Franz

Christian T Lopes

Dylan Fong

Mike Kucera

Manfred Cheung

...

2023/1/1

Single-nucleus multiomic atlas of frontal cortex in amyotrophic lateral sclerosis with a deep learning-based decoding of alternative polyadenylation mechanisms

bioRxiv

Paul M McKeever

Aiden M Sababi

Raghav Sharma

Nicholas Khuu

Zhiyu Xu

...

2023

Author Correction: Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing

Nature genetics

Isidro Cortés-Ciriano

Jake June-Koo Lee

Ruibin Xi

Dhawal Jain

Youngsook L Jung

...

2023/6

Fate specification of GFAP-negative primitive neural stem cells and their progeny at clonal resolution

Stem Cells and Development

Samantha Z Yammine

Ian Burns

Jessica Gosio

Andrew Peluso

Daniel M Merritt

...

2023/10/1

See List of Professors in Gary Bader University(University of Toronto)

Co-Authors

H-index: 111
Charles Boone

Charles Boone

University of Toronto

H-index: 103
Mike Tyers

Mike Tyers

Université de Montréal

H-index: 88
Andrew Emili

Andrew Emili

Boston University

H-index: 88
Brenda Andrews

Brenda Andrews

University of Toronto

H-index: 50
Alexander R Pico

Alexander R Pico

University of California, San Francisco

H-index: 47
Amy Tong

Amy Tong

University of Toronto

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