Erik van Nimwegen

Erik van Nimwegen

Universität Basel

H-index: 56

Europe-Switzerland

About Erik van Nimwegen

Erik van Nimwegen, With an exceptional h-index of 56 and a recent h-index of 35 (since 2020), a distinguished researcher at Universität Basel, specializes in the field of computational biology, genomics, systems biology, transcription regulation, genome evolution.

His recent articles reflect a diverse array of research interests and contributions to the field:

Revitalizing antibiotic discovery and development through in vitro modelling of in-patient conditions

E. coli leverages growth arrest to remodel its proteome upon entry into starvation

Effective bet-hedging through growth rate dependent stability

Identifying cell states in single-cell RNA-seq data at statistically maximal resolution

Improved analysis of (e) CLIP data with RCRUNCH yields a compendium of RNA-binding protein binding sites and motifs

Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements

Growth rate controls the sensitivity of gene regulatory circuits

Frequent co-regulation of splicing and polyadenylation by RNA-binding proteins inferred with MAPP

Erik van Nimwegen Information

University

Position

Professor of computational systems biology Biozentrum

Citations(all)

19435

Citations(since 2020)

6217

Cited By

15893

hIndex(all)

56

hIndex(since 2020)

35

i10Index(all)

96

i10Index(since 2020)

72

Email

University Profile Page

Universität Basel

Google Scholar

View Google Scholar Profile

Erik van Nimwegen Skills & Research Interests

computational biology

genomics

systems biology

transcription regulation

genome evolution

Top articles of Erik van Nimwegen

Title

Journal

Author(s)

Publication Date

Revitalizing antibiotic discovery and development through in vitro modelling of in-patient conditions

Nature Microbiology

Julie Sollier

Marek Basler

Petr Broz

Petra S Dittrich

Knut Drescher

...

2024/1/4

E. coli leverages growth arrest to remodel its proteome upon entry into starvation

bioRxiv

Theo Gervais

Bjorn Kscheschinski

Michael Mell

Nevil Goepfert

Erik van Nimwegen

...

2024

Effective bet-hedging through growth rate dependent stability

Proceedings of the National Academy of Sciences

Daan H de Groot

Age J Tjalma

Frank J Bruggeman

Erik van Nimwegen

2023/2/21

Identifying cell states in single-cell RNA-seq data at statistically maximal resolution

bioRxiv

Pascal Grobecker

Erik van Nimwegen

2023

Improved analysis of (e) CLIP data with RCRUNCH yields a compendium of RNA-binding protein binding sites and motifs

Genome Biology

Maria Katsantoni

Erik van Nimwegen

Mihaela Zavolan

2023/4/17

Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements

Nature genetics

Damir Baranasic

Matthias Hörtenhuber

Piotr J Balwierz

Tobias Zehnder

Abdul Kadir Mukarram

...

2022/7

Growth rate controls the sensitivity of gene regulatory circuits

bioRxiv

Thomas Julou

Théo Gervais

Diana Blank

Erik van Nimwegen

2022/4/4

Frequent co-regulation of splicing and polyadenylation by RNA-binding proteins inferred with MAPP

bioRxiv

Maciej Bak

Erik van Nimwegen

Ralf Schmidt

Mihaela Zavolan

Andreas J Gruber

2022/1/11

The protooncogene Ski regulates the neuron-glia switch during development of the mammalian cerebral cortex

bioRxiv

Alice Grison

Zahra Karimaddini

Jeremie Breda

Tanzila Mukhtar

Marcelo Boareto

...

2022/12/16

Temporal and sequential transcriptional dynamics define lineage shifts in corticogenesis

The EMBO journal

Tanzila Mukhtar

Jeremie Breda

Manal A Adam

Marcelo Boareto

Pascal Grobecker

...

2022/12/15

No evidence that synonymous mutations in yeast genes are mostly deleterious

bioRxiv

Leonid Kruglyak

Andreas Beyer

Joshua S Bloom

Jan Grossbach

Tami D Lieberman

...

2022/7/15

Whole genome phylogenies reflect the distributions of recombination rates for many bacterial species

Elife

Thomas Sakoparnig

Chris Field

Erik van Nimwegen

2021/1/8

Genome-wide gene expression noise in Escherichia coli is condition-dependent and determined by propagation of noise through the regulatory network

PLoS biology

Arantxa Urchueguía

Luca Galbusera

Dany Chauvin

Gwendoline Bellement

Thomas Julou

...

2021/12/17

Investigate the origins of COVID-19

Science

Jesse D Bloom

Yujia Alina Chan

Ralph S Baric

Pamela J Bjorkman

Sarah Cobey

...

2021/5/14

Bayesian inference of gene expression states from single-cell RNA-seq data

Nature Biotechnology

Jérémie Breda

Mihaela Zavolan

Erik van Nimwegen

2021/4/29

Subpopulations of sensorless bacteria drive fitness in fluctuating environments

PLoS biology

Thomas Julou

Ludovit Zweifel

Diana Blank

Athos Fiori

Erik van Nimwegen

2020/12/3

Using fluorescence flow cytometry data for single-cell gene expression analysis in bacteria

PLoS One

Luca Galbusera

Gwendoline Bellement-Theroue

Arantxa Urchueguia

Thomas Julou

Erik van Nimwegen

2020/10/12

Response to comment on ‘Initiation of chromosome replication controls both division and replication cycles in E. coli through a double-adder mechanism’

bioRxiv

Guillaume Witz

Thomas Julou

Erik van Nimwegen

2020/8/5

Tead transcription factors differentially regulate cortical development

Scientific reports

Tanzila Mukhtar

Jeremie Breda

Alice Grison

Zahra Karimaddini

Pascal Grobecker

...

2020/3/13

See List of Professors in Erik van Nimwegen University(Universität Basel)

Co-Authors

H-index: 87
Martijn Huynen

Martijn Huynen

Radboud Universiteit

H-index: 74
Mihaela Zavolan

Mihaela Zavolan

Universität Basel

H-index: 71
James Crutchfield

James Crutchfield

University of California, Davis

H-index: 50
Carsten O. Daub

Carsten O. Daub

Karolinska Institutet

H-index: 31
Robert Ivanek

Robert Ivanek

Universität Basel

H-index: 22
Olin Silander

Olin Silander

Massey University

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