Eric E. Allen

Eric E. Allen

University of California, San Diego

H-index: 51

North America-United States

About Eric E. Allen

Eric E. Allen, With an exceptional h-index of 51 and a recent h-index of 38 (since 2020), a distinguished researcher at University of California, San Diego, specializes in the field of Metagenomics, Microbial Genetics, Bioinformatics.

His recent articles reflect a diverse array of research interests and contributions to the field:

Enrichable consortia of microbial symbionts degrade macroalgal polysaccharides in Kyphosus fish

Herbivorous fish microbiome adaptations to sulfated dietary polysaccharides

Terpene biosynthesis in marine sponge animals

Variation in survival and gut microbiome composition of hatchery-grown native oysters at various locations within the Puget Sound

Fine scale transitions of the microbiota and metabolome along the gastrointestinal tract of herbivorous fishes

Microbiomes of hadal fishes across trench habitats contain similar taxa and known piezophiles

Host biology, ecology and the environment influence microbial biomass and diversity in 101 marine fish species

Fish microbiomes 101: disentangling the rules governing marine fish mucosal microbiomes across 101 species

Eric E. Allen Information

University

Position

Professor of Marine Biology

Citations(all)

13621

Citations(since 2020)

5435

Cited By

10139

hIndex(all)

51

hIndex(since 2020)

38

i10Index(all)

86

i10Index(since 2020)

77

Email

University Profile Page

University of California, San Diego

Google Scholar

View Google Scholar Profile

Eric E. Allen Skills & Research Interests

Metagenomics

Microbial Genetics

Bioinformatics

Top articles of Eric E. Allen

Title

Journal

Author(s)

Publication Date

Enrichable consortia of microbial symbionts degrade macroalgal polysaccharides in Kyphosus fish

Mbio

Aaron Oliver

Sheila Podell

Linda Wegley Kelly

Wesley J Sparagon

Alvaro M Plominsky

...

2024/3/27

Herbivorous fish microbiome adaptations to sulfated dietary polysaccharides

Applied and environmental microbiology

Sheila Podell

Aaron Oliver

Linda Wegley Kelly

Wesley J Sparagon

Alvaro M Plominsky

...

2023/5/31

Terpene biosynthesis in marine sponge animals

Proceedings of the National Academy of Sciences

Kayla Wilson

Tristan de Rond

Immo Burkhardt

Taylor S Steele

Rebecca JB Schäfer

...

2023/2/28

Variation in survival and gut microbiome composition of hatchery-grown native oysters at various locations within the Puget Sound

Microbiology spectrum

Emily Kunselman

Jeremiah J Minich

Micah Horwith

Jack A Gilbert

Eric E Allen

2022/6/29

Fine scale transitions of the microbiota and metabolome along the gastrointestinal tract of herbivorous fishes

Animal Microbiome

Wesley J Sparagon

Emily C Gentry

Jeremiah J Minich

Lisa Vollbrecht

Lieve ML Laurens

...

2022/5/23

Microbiomes of hadal fishes across trench habitats contain similar taxa and known piezophiles

MSphere

Jessica M Blanton

Logan M Peoples

Mackenzie E Gerringer

Caroline M Iacuaniello

Natalya D Gallo

...

2022/4/27

Host biology, ecology and the environment influence microbial biomass and diversity in 101 marine fish species

Nature Communications

Jeremiah J Minich

Andreas Härer

Joseph Vechinski

Benjamin W Frable

Zachary R Skelton

...

2022/11/17

Fish microbiomes 101: disentangling the rules governing marine fish mucosal microbiomes across 101 species

bioRxiv

Jeremiah Minich

Andreas Härer

Joseph Vechinski

Benjamin W Frable

Zachary Skelton

...

2022/3/8

The Natural Product Domain Seeker version 2 (NaPDoS2) webtool relates ketosynthase phylogeny to biosynthetic function

Journal of Biological Chemistry

Leesa J Klau

Sheila Podell

Kaitlin E Creamer

Alyssa M Demko

Hans W Singh

...

2022/10/1

Microbiomes of hadal fishes contain similar taxa, obligate symbionts, and known piezophiles across trench habitats

bioRxiv

Jessica M Blanton

Logan M Peoples

Mackenzie E Gerringer

Caroline M Iacuniello

Natalya D Gallo

...

2022/1/16

Phenotypic and transcriptional response of Daphnia pulicaria to the combined effects of temperature and predation

PloS one

Aaron Oliver

Hamanda B Cavalheri

Thiago G Lima

Natalie T Jones

Sheila Podell

...

2022/7/14

Microbiome divergence of marine gastropod species separated by the Isthmus of Panama

bioRxiv

Alexander T Neu

Mark E Torchin

Eric E Allen

Kaustuv Roy

2021/7/9

A genomic catalog of Earth’s microbiomes

Nature biotechnology

Stephen Nayfach

Simon Roux

Rekha Seshadri

Daniel Udwary

Neha Varghese

...

2021/4

Defining and quantifying the core microbiome: challenges and prospects

Alexander T Neu

Eric E Allen

Kaustuv Roy

2021/12/21

Genetic suppression of lethal mutations in fatty acid biosynthesis mediated by a secondary lipid synthase

Applied and Environmental Microbiology

Marco N Allemann

Eric E Allen

2021/5/26

Decade‐scale stability and change in a marine bivalve microbiome

Molecular Ecology

Alexander T Neu

Ian V Hughes

Eric E Allen

Kaustuv Roy

2021/3

Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment

Microbiome

Jeremiah J Minich

Farhana Ali

Clarisse Marotz

Pedro Belda-Ferre

Leslie Chiang

...

2021/12

Impacts of the Marine Hatchery Built Environment, Water and Feed on Across Ontogeny in Yellowtail Kingfish, Seriola lalandi

FRONTIERS IN MARINE SCIENCE

Jeremiah J Minich

Barbara Nowak

Abigail Elizur

Rob Knight

Stewart Fielder

...

2021/5/13

Alternative swabs and storage for SARS-CoV-2 detection in a hospital environment

Jeremiah J Minich

Farhana Ali

Clarisse Marotz

Pedro Belda-Ferre

Leslie Chiang

...

2021/2/25

Do host‐associated microbes show a contrarian latitudinal diversity gradient? Insights from Mytilus californianus, an intertidal foundation host

Journal of Biogeography

Alexander T Neu

Eric E Allen

Kaustuv Roy

2021/11

See List of Professors in Eric E. Allen University(University of California, San Diego)

Co-Authors

H-index: 234
Rob Knight

Rob Knight

University of California, San Diego

H-index: 149
Jillian BANFIELD

Jillian BANFIELD

University of California, Berkeley

H-index: 111
Pieter C Dorrestein

Pieter C Dorrestein

University of California, San Diego

H-index: 93
Paul Jensen

Paul Jensen

University of California, San Diego

H-index: 89
Bradley Scott Moore

Bradley Scott Moore

University of California, San Diego

H-index: 78
Gene W. Tyson

Gene W. Tyson

Queensland University of Technology

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