Dong-Jun Yu
Nanjing University of Science and Technology
H-index: 37
Asia-China
Top articles of Dong-Jun Yu
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
Robust GEPSVM classifier: An efficient iterative optimization framework | Information Sciences | He Yan Yan Liu Yanmeng Li Qiaolin Ye Dong-Jun Yu | 2024/2/1 |
MINDG: a drug–target interaction prediction method based on an integrated learning algorithm | Bioinformatics | Hailong Yang Yue Chen Yun Zuo Zhaohong Deng Xiaoyong Pan | 2024/4/1 |
TM-search: An Efficient and Effective Tool for Protein Structure Database Search | Journal of Chemical Information and Modeling | Zi Liu Chengxin Zhang Qidi Zhang Yang Zhang Dong-Jun Yu | 2024/1/25 |
ULDNA: integrating unsupervised multi-source language models with LSTM-attention network for high-accuracy protein–DNA binding site prediction | Briefings in Bioinformatics | Yi-Heng Zhu Zi Liu Yan Liu Zhiwei Ji Dong-Jun Yu | 2024/3/1 |
iMRSAPred: Improved Prediction of Anti-MRSA Peptides Using Physicochemical and Pairwise Contact-Energy Properties of Amino Acids | ACS omega | Muhammad Arif Ge Fang Huma Fida Saleh Musleh Dong-Jun Yu | 2024/1/3 |
GMFGRN: a matrix factorization and graph neural network approach for gene regulatory network inference | Briefings in Bioinformatics | Shuo Li Yan Liu Long-Chen Shen He Yan Jiangning Song | 2024/3/1 |
FCMSTrans: Accurate Prediction of Disease-Associated nsSNPs by Utilizing Multiscale Convolution and Deep Feature Combination within a Transformer Framework | Journal of Chemical Information and Modeling | Ming Zhang Chao Gong Fang Ge Dong-Jun Yu | 2024/2/13 |
TransC-ac4C: Identification of N4-acetylcytidine (ac4C) sites in mRNA using deep learning | IEEE/ACM Transactions on Computational Biology and Bioinformatics | Dian Liu Zi Liu Yunpeng Xia Zhikang Wang Jiangning Song | 2024/4/12 |
TransEFVP: A Two-Stage Approach for the Prediction of Human Pathogenic Variants Based on Protein Sequence Embedding Fusion | Journal of Chemical Information and Modeling | Zihao Yan Fang Ge Yan Liu Yumeng Zhang Fuyi Li | 2024/2/9 |
scRCA: a Siamese network-based pipeline for the annotation of cell types using imperfect single-cell RNA-seq reference data | bioRxiv | Yan Liu Chen Li Long-Chen Shen Yan He Wei Guo | 2024 |
TripletCell: a deep metric learning framework for accurate annotation of cell types at the single-cell level | Briefings in Bioinformatics | Yan Liu Guo Wei Chen Li Long-Chen Shen Robin B Gasser | 2023/4 |
PScL-2LSAESM: bioimage-based prediction of protein subcellular localization by integrating heterogeneous features with the two-level SAE-SM and mean ensemble method | Bioinformatics | Matee Ullah Fazal Hadi Jiangning Song Dong-Jun Yu | 2023/1/1 |
Integrating unsupervised language model with multi-view multiple sequence alignments for high-accuracy inter-chain contact prediction | Computers in Biology and Medicine | Zi Liu Yi-Heng Zhu Long-Chen Shen Xuan Xiao Wang-Ren Qiu | 2023/11/1 |
Gcmapcrys: integrating graph attention network with predicted contact map for multi-stage protein crystallization propensity prediction | Analytical Biochemistry | Peng-Hao Wang Yi-Heng Zhu Xibei Yang Dong-Jun Yu | 2023/2/15 |
Robust generalized canonical correlation analysis | Applied Intelligence | He Yan Li Cheng Qiaolin Ye Dong-Jun Yu Yong Qi | 2023/9 |
Improving DNA-binding protein prediction using three-part sequence-order feature extraction and a deep neural network algorithm | Journal of Chemical Information and Modeling | Jun Hu Wen-Wu Zeng Ning-Xin Jia Muhammad Arif Dong-Jun Yu | 2023/1/31 |
MLNGCF: circRNA–disease associations prediction with multilayer attention neural graph-based collaborative filtering | Bioinformatics | Qunzhuo Wu Zhaohong Deng Wei Zhang Xiaoyong Pan Kup-Sze Choi | 2023/8/1 |
Supervised contrastive learning enhances MHC-II peptide binding affinity prediction | bioRxiv | Long-Chen Shen Yan Liu Zi Liu Yumeng Zhang Zhikang Wang | 2023/12/23 |
VPatho: a deep learning-based two-stage approach for accurate prediction of gain-of-function and loss-of-function variants | Briefings in Bioinformatics | Fang Ge Chen Li Shahid Iqbal Arif Muhammad Fuyi Li | 2023/1 |
Prediction of multiple types of RNA modifications via biological language model | IEEE/ACM Transactions on Computational Biology and Bioinformatics | Ying Zhang Fang Ge Fuyi Li Xibei Yang Jiangning Song | 2023/6/8 |
