David Hoksza
Univerzita Karlova
H-index: 17
Europe-Czech Republic
Top articles of David Hoksza
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
AHoJ-DB: A PDB-wide Assignment of apo & holo Relationships Based on Individual Protein–Ligand Interactions | Journal of Molecular Biology | Christos P Feidakis Radoslav Krivak David Hoksza Marian Novotny | 2024/3/18 |
Visualizations for universal deep-feature representations: survey and taxonomy | Tomáš Skopal Ladislav Peška David Hoksza Ivana Sixtová David Bernhauer | 2024/2 | |
Genomics 2 Proteins portal: A resource and discovery tool for linking genetic screening outputs to protein sequences and structures | bioRxiv | Seulki Kwon Jordan Safer Duyen T Nguyen David Hoksza Patrick May | 2024 |
Visualization of automatically combined disease maps and pathway diagrams for rare diseases | Frontiers in bioinformatics | Piotr Gawron David Hoksza Janet Piñero Maria Peña-Chilet Marina Esteban-Medina | 2023 |
Cryptic binding site prediction with protein language models | Vít Škrhák Kamila Riedlova Marian Novotný David Hoksza | 2023/12/5 | |
Framework for Protein Structures Conformation Analysis | Vít Škrhák David Hoksza | 2023/12/5 | |
Visual Representations for Data Analytics: User Study | Ladislav Peska Ivana Sixtova David Hoksza David Bernhauer Tomas Skopal | 2023/11/16 | |
Delineation of functionally essential protein regions for 242 neurodevelopmental genes | Brain | Sumaiya Iqbal Tobias Brünger Eduardo Pérez-Palma Marie Macnee Andreas Brunklaus | 2023/2/1 |
Hybrid protein-ligand binding residue prediction with protein language models: Does the structure matter? | bioRxiv | Hamza Gamouh David Hoksza Marian Novotny | 2023 |
Genomic analysis of AlphaFold2-predicted structures identifies maps of 3D essential sites in 243 neurodevelopmental disorder-associated proteins | Biophysical Journal | Sumaiya Iqbal Tobias Brünger Eduardo Pérez-Palma David Hoksza Arthur J Campbell | 2022/2/11 |
PDBe-KB: collaboratively defining the biological context of structural data | Nucleic acids research | 2022/1/7 | |
AHoJ: rapid, tailored search and retrieval of apo and holo protein structures for user-defined ligands | Bioinformatics | Christos P Feidakis Radoslav Krivak David Hoksza Marian Novotny | 2022/12/15 |
Exploration of protein sequence embeddings for protein-ligand binding site detection | David Hoksza Hamza Gamouh | 2022/12/6 | |
Machine and human interpretable patient visualizations | Ivaná Sixtova Tomáš Skopal David Hoksza Jakub Matějík Tomáš Uher | 2022/12/6 | |
PrankWeb 3: accelerated ligand-binding site predictions for experimental and modelled protein structures | Nucleic Acids Research | David Jakubec Petr Skoda Radoslav Krivak Marian Novotny David Hoksza | 2022/7/5 |
R2DT is a framework for predicting and visualising RNA secondary structure using templates | Nature Communications | Blake A Sweeney David Hoksza Eric P Nawrocki Carlos Eduardo Ribas Fábio Madeira | 2021/6/9 |
RNAcentral 2021: secondary structure integration, improved sequence search and new member databases | Nucleic Acids Research | 2021/1/8 | |
MINERVA, A Platform for the Exploration of Disease Maps | Marek Ostaszewski Piotr Gawron David Hoksza Alexander Mazein Ewa Smula | 2021/1/1 | |
PDBe-KB: a community-driven resource for structural and functional annotations | Nucleic Acids Research | Mihaly Varadi John Berrisford Mandar Deshpande Sreenath S Nair Aleksandras Gutmanas | 2020/1/8 |
Similarity-based approaches to molecular function discovery | David Hoksza | 2020/12/2 |
Co-Authors
