David Doty

David Doty

University of California, Davis

H-index: 25

North America-United States

About David Doty

David Doty, With an exceptional h-index of 25 and a recent h-index of 18 (since 2020), a distinguished researcher at University of California, Davis, specializes in the field of molecular computing, chemical reaction networks, self-assembly, DNA nanotechnology, distributed computing.

His recent articles reflect a diverse array of research interests and contributions to the field:

Rate-independent continuous inhibitory chemical reaction networks are Turing-universal

Harvesting Brownian Motion: Zero Energy Computational Sampling

Proceedings of the 29th International Conference on DNA Computing and Molecular Programming (DNA 29)

Optimal Information Encoding in Chemical Reaction Networks

Accelerating Self-Assembly of Crisscross Slat Systems

LIPIcs, Volume 257, SAND 2023, Complete Volume

Thermodynamically Driven Signal Amplification

2nd Symposium on Algorithmic Foundations of Dynamic Networks

David Doty Information

University

Position

Assistant Professor of Computer Science

Citations(all)

2018

Citations(since 2020)

1019

Cited By

1415

hIndex(all)

25

hIndex(since 2020)

18

i10Index(all)

39

i10Index(since 2020)

25

Email

University Profile Page

University of California, Davis

Google Scholar

View Google Scholar Profile

David Doty Skills & Research Interests

molecular computing

chemical reaction networks

self-assembly

DNA nanotechnology

distributed computing

Top articles of David Doty

Title

Journal

Author(s)

Publication Date

Rate-independent continuous inhibitory chemical reaction networks are Turing-universal

arXiv preprint arXiv:2403.07099

Kim Calabrese

David Doty

2024/3/11

Harvesting Brownian Motion: Zero Energy Computational Sampling

arXiv preprint arXiv:2309.06957

David Doty

Niels Kornerup

Austin Luchsinger

Leo Orshansky

David Soloveichik

...

2023/9/13

Proceedings of the 29th International Conference on DNA Computing and Molecular Programming (DNA 29)

Xiaofeng Meng

Fusheng Wang

Chang-Tien Lu

Yan Huang

Shashi Shekhar

...

2021/11/2

Optimal Information Encoding in Chemical Reaction Networks

arXiv preprint arXiv:2307.01939

Austin Luchsinger

David Doty

David Soloveichik

2023/7/4

Accelerating Self-Assembly of Crisscross Slat Systems

David Doty

Hunter Fleming

Daniel Hader

Matthew J Patitz

Lukas A Vaughan

2023

LIPIcs, Volume 257, SAND 2023, Complete Volume

David Doty

Paul Spirakis

2023

Thermodynamically Driven Signal Amplification

arXiv preprint arXiv:2307.01550

Joshua Petrack

David Soloveichik

David Doty

2023/7/4

2nd Symposium on Algorithmic Foundations of Dynamic Networks

David Doty

Paul Spirakis

2023/6

Is stochastic thermodynamics the key to understanding the energy costs of computation?

arXiv preprint arXiv:2311.17166

David Wolpert

Jan Korbel

Christopher Lynn

Farita Tasnim

Joshua Grochow

...

2023/11/28

Rate-independent computation in continuous chemical reaction networks

Journal of the ACM

Ho-Lin Chen

David Doty

Wyatt Reeves

David Soloveichik

2023/5/23

Dynamic size counting in population protocols

arXiv preprint arXiv:2202.12864

David Doty

Mahsa Eftekhari

2022/2/25

Time-optimal self-stabilizing leader election in population protocols

Janna Burman

Ho-Lin Chen

Hsueh-Ping Chen

David Doty

Thomas Nowak

...

2021/7/21

Simulating 3-symbol Turing machines with SIMD|| DNA

arXiv preprint arXiv:2105.08559

David Doty

Aaron Ong

2021/5/18

A time and space optimal stable population protocol solving exact majority

David Doty

Mahsa Eftekhari

Leszek Gąsieniec

Eric Severson

Przemyslaw Uznański

...

2022/2/7

ppsim: A software package for efficiently simulating and visualizing population protocols

David Doty

Eric Severson

2021

A survey of size counting in population protocols

David Doty

Mahsa Eftekhari

2021/11/26

scadnano: A browser-based, scriptable tool for designing DNA nanostructures

David Doty

Benjamin L Lee

Tristan Stérin

2020/9/4

Message complexity of population protocols

arXiv preprint arXiv:2003.09532

Talley Amir

James Aspnes

David Doty

Mahsa Eftekhari

Eric Severson

2020/3/20

Lecture Notes for ECS 289A: Theory of Molecular Computation

David Doty

2020

Computing properties of thermodynamic binding networks: An integer programming approach

arXiv preprint arXiv:2011.10677

David Haley

David Doty

2020/11/20

See List of Professors in David Doty University(University of California, Davis)

Co-Authors

H-index: 52
Paul Spirakis

Paul Spirakis

University of Liverpool

H-index: 45
Leszek A Gąsieniec

Leszek A Gąsieniec

University of Liverpool

H-index: 38
Lila Kari (nee Santean)

Lila Kari (nee Santean)

University of Waterloo

H-index: 31
Jack H. Lutz

Jack H. Lutz

Iowa State University

H-index: 23
Robert Schweller

Robert Schweller

University of Texas Rio Grande Valley

H-index: 23
Rachel Cummings

Rachel Cummings

Columbia University in the City of New York

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