Daniel Osorio

Daniel Osorio

Universitetet i Oslo

H-index: 11

Europe-Norway

About Daniel Osorio

Daniel Osorio, With an exceptional h-index of 11 and a recent h-index of 11 (since 2020), a distinguished researcher at Universitetet i Oslo, specializes in the field of Single-Cell Transcriptomics, Gene Expression Regulation, Data mining, Metabolic Modeling, Bioactive Peptides.

His recent articles reflect a diverse array of research interests and contributions to the field:

Targeting IRE1α alleviates the immunosuppressive tumor microenvironment in prostate cancer

Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcriptomics data

Mapping oto-pharyngeal development in a human inner ear organoid model

A single-cell level comparison of human inner ear organoids with the human cochlea and vestibular organs

Ablation of long noncoding RNA MALAT1 activates antioxidant pathway and alleviates sepsis in mice

Hyaline cartilage differentiation of fibroblasts in regeneration and regenerative medicine

Drug combination prioritization for cancer treatment using single-cell RNA-seq based transfer learning

rPanglaoDB: an R package to download and merge labeled single-cell RNA-seq data from the PanglaoDB database

Daniel Osorio Information

University

Position

Marie Skłodowska-Curie Postdoctoral Scientia Fellow at

Citations(all)

704

Citations(since 2020)

672

Cited By

171

hIndex(all)

11

hIndex(since 2020)

11

i10Index(all)

13

i10Index(since 2020)

13

Email

University Profile Page

Universitetet i Oslo

Google Scholar

View Google Scholar Profile

Daniel Osorio Skills & Research Interests

Single-Cell Transcriptomics

Gene Expression Regulation

Data mining

Metabolic Modeling

Bioactive Peptides

Top articles of Daniel Osorio

Title

Journal

Author(s)

Publication Date

Targeting IRE1α alleviates the immunosuppressive tumor microenvironment in prostate cancer

Cancer Research

Bilal Unal

Omer Faruk Kuzu

Yang Jin

Daniel Camilo Hurtado

Marieke Lydia Kuijjer

...

2024/3/22

Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcriptomics data

Nature Computational Science

Daniel Osorio

Anna Capasso

S Gail Eckhardt

Uma Giri

Alexander Somma

...

2024/3/4

Mapping oto-pharyngeal development in a human inner ear organoid model

Development

Matthew R Steinhart

Wouter H van der Valk

Daniel Osorio

Sara A Serdy

Jingyuan Zhang

...

2023/10/1

A single-cell level comparison of human inner ear organoids with the human cochlea and vestibular organs

Cell Reports

Wouter H van der Valk

Edward SA van Beelen

Matthew R Steinhart

Carl Nist-Lund

Daniel Osorio

...

2023/6/27

Ablation of long noncoding RNA MALAT1 activates antioxidant pathway and alleviates sepsis in mice

Redox biology

Jingshu Chen

Shu Tang

Sui Ke

James J Cai

Daniel Osorio

...

2022/8/1

Hyaline cartilage differentiation of fibroblasts in regeneration and regenerative medicine

Development

Ling Yu

Yu-Lieh Lin

Mingquan Yan

Tao Li

Emily Y Wu

...

2022/1/15

Drug combination prioritization for cancer treatment using single-cell RNA-seq based transfer learning

bioRxiv

Daniel Osorio

Daniel J McGrail

Nidhi Sahni

S Stephen Yi

2022/4/9

rPanglaoDB: an R package to download and merge labeled single-cell RNA-seq data from the PanglaoDB database

Bioinformatics

Daniel Osorio

Marieke L Kuijjer

James J Cai

2022/1/15

Drug combination prediction for cancer treatment using disease-specific drug response profiles and single-cell transcriptional signatures

bioRxiv

Daniel Osorio

Parastoo Shahrouzi

Xavier Tekpli

Vessela N Kristensen

Marieke L Kuijjer

2022/4/1

Gag‐like proteins: Novel mediators of prenatal alcohol exposure in neural development

Alcoholism: Clinical and Experimental Research

Marisa R Pinson

Dae D Chung

Amanda H Mahnke

Nihal A Salem

Daniel Osorio

...

2022

scInTime: A Computational Method Leveraging Single-Cell Trajectory and Gene Regulatory Networks to Identify Master Regulators of Cellular Differentiation

Genes

Qian Xu

Guanxun Li

Daniel Osorio

Yan Zhong

Yongjian Yang

...

2022/2

Single-cell RNA sequencing reveals how the aryl hydrocarbon receptor shapes cellular differentiation potency in the mouse colon

Cancer Prevention Research

Yongjian Yang

Daniel Osorio

Laurie A Davidson

Huajun Han

Destiny A Mullens

...

2022/1/1

scTenifoldKnk: An efficient virtual knockout tool for gene function predictions via single-cell gene regulatory network perturbation

Patterns

Daniel Osorio

Yan Zhong

Guanxun Li

Qian Xu

Yongjian Yang

...

2022/2/1

Regulatory network of PD1 signaling is associated with prognosis in glioblastoma multiforme

Cancer Research

Camila M Lopes-Ramos

Tatiana Belova

Tess H Brunner

Marouen Ben Guebila

Daniel Osorio

...

2021/11/1

Systematic determination of the mitochondrial proportion in human and mice tissues for single-cell RNA-sequencing data quality control

Bioinformatics

Daniel Osorio

James J Cai

2021/4/1

g2f as a Novel Tool to Find and Fill Gaps in Metabolic Networks.

R J.

Daniel Osorio

Kelly Botero

Andrés Pinzón Velasco

Nicolás Mendoza-Mejía

Felipe Rojas-Rodríguez

...

2021/12/1

Single-cell gene regulatory network analysis reveals potential mechanisms of action of antimalarials against SARS-CoV-2

BiorXiv

Jasper Wouters

Zeynep Kalender-Atak

Liesbeth Minnoye

Katina I Spanier

Maxime De Waegeneer

...

2019/7/26

Antecedent presentation of neurological phenotypes in the Collaborative Cross reveals four classes with complex sex-dependencies

Scientific Reports

Raena Eldridge

Daniel Osorio

Katia Amstalden

Caitlin Edwards

Colin R Young

...

2020/5/13

scTenifoldNet: a machine learning workflow for constructing and comparing transcriptome-wide gene regulatory networks from single-cell data

Patterns

Daniel Osorio

Yan Zhong

Guanxun Li

Jianhua Z Huang

James J Cai

2020/12/11

Overdispersed gene expression in schizophrenia

npj Schizophrenia

Guangzao Huang

Daniel Osorio

Jinting Guan

Guoli Ji

James J Cai

2020/4/3

See List of Professors in Daniel Osorio University(Universitetet i Oslo)

Co-Authors

H-index: 30
marieke kuijjer

marieke kuijjer

Universitetet i Oslo

H-index: 28
Janneth González Santos (ORCID 0000-0003-4482-256X)

Janneth González Santos (ORCID 0000-0003-4482-256X)

Pontificia Universidad Javeriana

H-index: 18
Karl R Koehler

Karl R Koehler

Harvard University

H-index: 13
Andres Mauricio Pinzon Velasco

Andres Mauricio Pinzon Velasco

Universidad Nacional de Colombia

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