Chun Jimmie Ye

About Chun Jimmie Ye

Chun Jimmie Ye, With an exceptional h-index of 45 and a recent h-index of 43 (since 2020), a distinguished researcher at University of California, San Francisco, specializes in the field of Human Genetics, Systems Biology, Functional Genomics, Immunology, Computational Biology.

His recent articles reflect a diverse array of research interests and contributions to the field:

Cell subtype-specific effects of genetic variation in the Alzheimer’s disease brain

SURGE: uncovering context-specific genetic-regulation of gene expression from single-cell RNA sequencing using latent-factor models

Protracted neuronal recruitment in the temporal lobes of young children

SingleQ: a comprehensive database of single-cell expression quantitative trait loci (sc-eQTLs) cross human tissues

Population Diversity at the Single-Cell Level

Demuxafy: improvement in droplet assignment by integrating multiple single-cell demultiplexing and doublet detection methods

Functional genomics in inborn errors of immunity

CD4+ CAR-T cell exhaustion associated with early relapse of multiple myeloma after BCMA CAR-T cell therapy

Chun Jimmie Ye Information

University

Position

Associate Professor of Medicine

Citations(all)

12884

Citations(since 2020)

9307

Cited By

6504

hIndex(all)

45

hIndex(since 2020)

43

i10Index(all)

75

i10Index(since 2020)

72

Email

University Profile Page

Google Scholar

Chun Jimmie Ye Skills & Research Interests

Human Genetics

Systems Biology

Functional Genomics

Immunology

Computational Biology

Top articles of Chun Jimmie Ye

Title

Journal

Author(s)

Publication Date

Cell subtype-specific effects of genetic variation in the Alzheimer’s disease brain

Nature Genetics

Masashi Fujita

Zongmei Gao

Lu Zeng

Cristin McCabe

Charles C White

...

2024/3/21

SURGE: uncovering context-specific genetic-regulation of gene expression from single-cell RNA sequencing using latent-factor models

Genome Biology

Benjamin J Strober

Karl Tayeb

Joshua Popp

Guanghao Qi

M Grace Gordon

...

2024/1/22

Protracted neuronal recruitment in the temporal lobes of young children

Nature

Marcos Assis Nascimento

Sean Biagiotti

Vicente Herranz-Pérez

Samara Santiago

Raymund Bueno

...

2024/2/29

SingleQ: a comprehensive database of single-cell expression quantitative trait loci (sc-eQTLs) cross human tissues

Database

Zhiwei Zhou

Jingyi Du

Jianhua Wang

Liangyi Liu

M Gracie Gordon

...

2024/1/1

Population Diversity at the Single-Cell Level

M Grace Gordon

Pooja Kathail

Bryson Choy

Min Cheol Kim

Thomas Mazumder

...

2024/2/21

Demuxafy: improvement in droplet assignment by integrating multiple single-cell demultiplexing and doublet detection methods

Genome Biology

Drew Neavin

Anne Senabouth

Himanshi Arora

Jimmy Tsz Hang Lee

Aida Ripoll-Cladellas

...

2024/4/15

Functional genomics in inborn errors of immunity

Charlotte Hurabielle

Taylor N LaFlam

Melissa Gearing

Chun Jimmie Ye

2024/2/8

CD4+ CAR-T cell exhaustion associated with early relapse of multiple myeloma after BCMA CAR-T cell therapy

Blood Advances

Guy Ledergor

Zenghua Fan

Kai Wu

Elizabeth McCarthy

Axel Hyrenius-Wittsten

...

2024/4/4

Base-editing mutagenesis maps alleles to tune human T cell functions

Nature

Ralf Schmidt

Carl C Ward

Rama Dajani

Zev Armour-Garb

Mineto Ota

...

2024/1/25

POS1044 SINGLE CELL TRANSCRIPTOMICS ANALYSIS OF BLOOD IMMUNE CELLS IDENTIFIES GENE SIGNATURES AND CELL SUBSETS ASSOCIATED WITH DISEASE ACTIVITY IN A DIVERSE POPULATION OF …

M Binvignat

B Miao

C Wibrand

M Yang

D Rychkov

...

2023/6/1

Cell-Specific Transposable Element Gene Expression Analysis Identifies Associations with Systemic Lupus Erythematosus Phenotypes

bioRxiv

Zachary Cutts

Sarah Patterson

Lenka Maliskova

Kimberly E Taylor

Chun Jimmie Ye

...

2023

A myeloid program associated with COVID-19 severity is decreased by therapeutic blockade of IL-6 signaling

Iscience

Jason A Hackney

Haridha Shivram

Jason Vander Heiden

Chris Overall

Luz Orozco

...

2023/10/20

Genome-wide prediction of disease variant effects with a deep protein language model

Nature Genetics

Nadav Brandes

Grant Goldman

Charlotte H Wang

Chun Jimmie Ye

Vasilis Ntranos

2023/9

Narcolepsy risk loci outline role of T cell autoimmunity and infectious triggers in narcolepsy

Nature communications

Hanna M Ollila

Eilon Sharon

Ling Lin

Nasa Sinnott-Armstrong

Aditya Ambati

...

2023/5/15

Deciphering Cell-types and Gene Signatures Associated with Disease Activity in Rheumatoid Arthritis using Single Cell RNA-sequencing

bioRxiv

Marie Binvignat

Brenda Miao

Camilla Wibrand

Monica Yang

Dmitry Rychkov

...

2023

Mitigation of chromosome loss in clinical CRISPR-Cas9-engineered T cells

Cell

Connor A Tsuchida

Nadav Brandes

Raymund Bueno

Marena Trinidad

Thomas Mazumder

...

2023/10/12

The Impact of Genomic Variation on Function (IGVF) Consortium

arXiv preprint arXiv:2307.13708

IGVF Consortium

2023/7/24

Reply to Barton et al: signatures of natural selection during the Black Death

bioRxiv

Tauras P Vilgalys

Jennifer Klunk

Christian E Demeure

Xiaoheng Cheng

Mari Shiratori

...

2023/4/7

Vaccine breakthrough hypoxemic COVID-19 pneumonia in patients with auto-Abs neutralizing type I IFNs

Science immunology

Paul Bastard

Sara E Vazquez

Jamin Liu

Matthew T Laurie

Chung Yu Wang

...

2023/12/22

Systematic functional interrogation of SARS-CoV-2 host factors using Perturb-seq

Nature Communications

Sara Sunshine

Andreas S Puschnik

Joseph M Replogle

Matthew T Laurie

Jamin Liu

...

2023/10/6

See List of Professors in Chun Jimmie Ye University(University of California, San Francisco)