Cedric Chauve
Simon Fraser University
H-index: 34
North America-Canada
Top articles of Cedric Chauve
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
TKSM: highly modular, user-customizable, and scalable transcriptomic sequencing long-read simulator | Bioinformatics | Fatih Karaoğlanoğlu Baraa Orabi Ryan Flannigan Cedric Chauve Faraz Hach | 2024/2/1 |
plASgraph2: using graph neural networks to detect plasmid contigs from an assembly graph | Frontiers in Microbiology | Janik Sielemann Katharina Sielemann Broňa Brejová Tomáš Vinař Cedric Chauve | 2023 |
PlasBin-flow: a flow-based MILP algorithm for plasmid contigs binning | Bioinformatics | Aniket Mane Mahsa Faizrahnemoon Tomáš Vinař Broňa Brejová Cedric Chauve | 2023/6/1 |
Freddie: annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing | Nucleic Acids Research | Baraa Orabi Ning Xie Brian McConeghy Xuesen Dong Cedric Chauve | 2023/1/25 |
Genion, an accurate tool to detect gene fusion from long transcriptomics reads | BMC genomics | Fatih Karaoglanoglu Cedric Chauve Faraz Hach | 2022/2/14 |
Automated identification of maximal differential cell populations in flow cytometry data | Cytometry Part A | Alice Yue Cedric Chauve Maxwell W Libbrecht Ryan R Brinkman | 2022/2 |
Fast and accurate matching of cellular barcodes across short-reads and long-reads of single-cell RNA-seq experiments | Iscience | Ghazal Ebrahimi Baraa Orabi Meghan Robinson Cedric Chauve Ryan Flannigan | 2022/7/15 |
A mixed integer linear programming algorithm for plasmid binning | Aniket Mane Mahsa Faizrahnemoon Cedric Chauve | 2022/5/15 | |
scTagger: fast and accurate matching of cellular barcodes across short-and long-reads of single-cell RNA-seq experiments | bioRxiv | Ghazal Ebrahimi Baraa Orabi Meghan Robinson Cedric Chauve Ryan Flannigan | 2022/4/22 |
Small parsimony for natural genomes in the DCJ-indel model | Journal of Bioinformatics and Computational Biology | Daniel Doerr Cedric Chauve | 2021/12/19 |
Refined Upper Bounds on the Size of the Condensed Neighbourhood of Sequences. | Cedric Chauve Marni Mishna France Paquet-Nadeau | 2021/8/30 | |
Counting and sampling gene family evolutionary histories in the duplication-loss and duplication-loss-transfer models | Journal of Mathematical Biology | Cedric Chauve Yann Ponty Michael Wallner | 2020/4 |
Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies | BMC biology | Robert M Waterhouse Sergey Aganezov Yoann Anselmetti Jiyoung Lee Livio Ruzzante | 2020/12 |
Ancestral genome organization as a diagnosis tool for phylogenomics | Phylogenetics in the Genomic Era | Eric Tannier Adelme Bazin Adrián Davín Laurent Guéguen Sèverine Bérard | 2020 |
Breakpoint distance and PQ-trees | Information and Computation | Haitao Jiang Hong Liu Cedric Chauve Binhai Zhu | 2020/12/1 |
PathOGiST: A Novel Method for Clustering Pathogen Isolates by Combining Multiple Genotyping Signals | Mohsen Katebi Pedro Feijao Julius Booth Mehrdad Mansouri Sean La | 2020 | |
Geographic heterogeneity impacts drug resistance predictions in Mycobacterium tuberculosis | bioRxiv | Guo Liang Gan Matthew H Nguyen Elijah Willie Mohammad H Rezaie Brian Lee | 2020/9/17 |
A Graph-Theoretic Barcode Ordering Model for Linked-Reads | Yoann Dufresne Chen Sun Pierre Marijon Dominique Lavenier Cedric Chauve | 2020/9/7 | |
HASLR: fast hybrid assembly of long reads | Iscience | Ehsan Haghshenas Hossein Asghari Jens Stoye Cedric Chauve Faraz Hach | 2020/8/21 |
The distance and median problems in the single-cut-or-join model with single-gene duplications | Algorithms for Molecular Biology | Aniket C Mane Manuel Lafond Pedro C Feijao Cedric Chauve | 2020/12 |
Co-Authors
