Caroline Colijn
Simon Fraser University
H-index: 45
North America-Canada
Top articles of Caroline Colijn
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
A new method for detecting mixed Mycobacterium tuberculosis infection and reconstructing constituent strains provides insights into transmission | bioRxiv | Benjamin Sobkowiak Patrick Cudahy Melanie H Chitwood Taane G Clark Caroline Colijn | 2024 |
Early prediction of Mycobacterium tuberculosis transmission clusters using supervised learning models | medRxiv | Omid Gheysar Gharamaleki Caroline Colijn Inna Sekirov James C Johnston Benjamin Sobkowiak | 2024 |
The recent rapid expansion of multidrug resistant Ural lineage Mycobacterium tuberculosis in Moldova | medRxiv | Melanie H Chitwood Caroline Colijn Chongguang Yang Valeiru Crudu Nelly Ciobanu | 2023 |
Endemic does not mean constant as SARS-CoV-2 continues to evolve | Evolution | Sarah P Otto Ailene MacPherson Caroline Colijn | 2024/3/9 |
The role of vaccine status homophily in the COVID-19 pandemic: a cross-sectional survey with modelling | BMC Public Health | Elisha B Are Kiffer G Card Caroline Colijn | 2024/2/14 |
Capturing diversity: Split systems and circular approximations for conservation | Journal of Theoretical Biology | Niloufar Abhari Caroline Colijn Arne Mooers Paul Tupper | 2024/2/7 |
Epidemiological cluster identification using multiple data sources: an approach using logistic regression | Microbial Genomics | Kurnia Susvitasari Paul F Tupper Irving Cancino-Muños Mariana G Lòpez Iñaki Comas | 2023/3/3 |
The utility of SARS-CoV-2 genomic data for informative clustering under different epidemiological scenarios and sampling | Infection, Genetics and Evolution | Benjamin Sobkowiak Pouya Haghmaram Natalie Prystajecky James EA Zlosnik John Tyson | 2023/9/1 |
Effective population size in simple infectious disease models | Journal of Mathematical Biology | Madi Yerlanov Piyush Agarwal Caroline Colijn Jessica E Stockdale | 2023/12 |
COVID-19 endgame: From pandemic to endemic? Vaccination, reopening and evolution in low-and high-vaccinated populations | Journal of Theoretical Biology | Elisha B Are Yexuan Song Jessica E Stockdale Paul Tupper Caroline Colijn | 2023/2/21 |
Genomic epidemiology offers high resolution estimates of serial intervals for COVID-19 | Nature Communications | Jessica E Stockdale Kurnia Susvitasari Paul Tupper Benjamin Sobkowiak Nicola Mulberry | 2023/8/10 |
Phylogenetic identification of influenza virus candidates for seasonal vaccines | Science Advances | Maryam Hayati Benjamin Sobkowiak Jessica E Stockdale Caroline Colijn | 2023/11/3 |
Genome-wide association with uncertainty in the genetic similarity matrix | Journal of Computational Biology | Shijia Wang Shufei Ge Benjamin Sobkowiak Liangliang Wang Louis Grandjean | 2023/2/1 |
Long-Term Dynamics of COVID-19 in a Multi-strain Model | Elisha B Are Jessica Stockdale Caroline Colijn | 2023/8/7 | |
Design and Analysis of Infectious Disease Studies | Oberwolfach Reports | Caroline Colijn M Elizabeth Halloran Philip D O'Neill Pieter Trapman | 2023/10/6 |
Signatures of transmission in within-host M. tuberculosis variation | medRxiv | Katharine S Walter Ted Cohen Barun Mathema Caroline Colijn Benjamin Sobkowiak | 2023/12/29 |
Endemic means change as SARS-CoV-2 evolves | medRxiv | Sarah Otto Ailene MacPherson Caroline Colijn | 2023 |
A fast and scalable method for inferring phylogenetic networks from trees by aligning lineage taxon strings | Genome Research | Louxin Zhang Niloufar Abhari Caroline Colijn Yufeng Wu | 2023/7/1 |
Genomic, clinical and immunity data join forces for public health | Amber Barton Caroline Colijn | 2023/10 | |
Pneumococcal population dynamics: Investigating vaccine-induced changes through multiscale modelling | PLOS Computational Biology | Nicola Mulberry Alexander R Rutherford Caroline Colijn | 2023/12/28 |
Co-Authors
