Carl Rothfels

Carl Rothfels

University of California, Berkeley

H-index: 44

North America-United States

About Carl Rothfels

Carl Rothfels, With an exceptional h-index of 44 and a recent h-index of 36 (since 2020), a distinguished researcher at University of California, Berkeley, specializes in the field of Systematic Biology, Fern Evolution, Phylogenetics, Polyploidy.

His recent articles reflect a diverse array of research interests and contributions to the field:

Commonly used Bayesian diversification methods lead to biologically meaningful differences in branch-specific rates on empirical phylogenies

The rapid radiation of Bomarea (Alstroemeriaceae: Liliales), driven by the rise of the Andes

Phylogenetic revision of Dennstaedtioideae (Dennstaedtiaceae: Polypodiales) with description of Mucura, gen. nov.

Resolving Deep Relationships and Revealing Ancient Whole-Genome Duplications in Pteridaceae using Transcriptomic Data

Diversification models conflate likelihood and prior, and cannot be compared using conventional model-comparison tools

Unearthing modes of climatic adaptation in underground storage organs across Liliales

homologizer: Phylogenetic phasing of gene copies into polyploid subgenomes

Phasing Gene Copies into Polyploid Subgenomes Using a Bayesian Phylogenetic Approach

Carl Rothfels Information

University

Position

___

Citations(all)

10079

Citations(since 2020)

6924

Cited By

5984

hIndex(all)

44

hIndex(since 2020)

36

i10Index(all)

71

i10Index(since 2020)

64

Email

University Profile Page

University of California, Berkeley

Google Scholar

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Carl Rothfels Skills & Research Interests

Systematic Biology

Fern Evolution

Phylogenetics

Polyploidy

Top articles of Carl Rothfels

Title

Journal

Author(s)

Publication Date

Commonly used Bayesian diversification methods lead to biologically meaningful differences in branch-specific rates on empirical phylogenies

Evolution Letters

Jesús Martínez-Gómez

Michael J Song

Carrie M Tribble

Bjørn T Kopperud

William A Freyman

...

2024/4/1

The rapid radiation of Bomarea (Alstroemeriaceae: Liliales), driven by the rise of the Andes

Evolution

Carrie M Tribble

Fernando Alzate-Guarín

Etelvina Gándara

Araz Vartoumian

John Gordon Burleigh

...

2023/2/1

Phylogenetic revision of Dennstaedtioideae (Dennstaedtiaceae: Polypodiales) with description of Mucura, gen. nov.

Taxon

Luz A Triana‐Moreno

Agustina Yañez

Li‐Yaung Kuo

Carl J Rothfels

Nelson Túlio L Pena

...

2023/2

Resolving Deep Relationships and Revealing Ancient Whole-Genome Duplications in Pteridaceae using Transcriptomic Data

American Fern Journal

Michael J Song

Carl J Rothfels

Eric Schuettpelz

Joel Nitta

Layne Huiet

...

2023/9

Diversification models conflate likelihood and prior, and cannot be compared using conventional model-comparison tools

Systematic Biology

Michael R May

Carl J Rothfels

2023/5/1

Unearthing modes of climatic adaptation in underground storage organs across Liliales

Systematic Biology

Carrie M Tribble

Michael R May

Abigail Jackson-Gain

Rosana Zenil-Ferguson

Chelsea D Specht

...

2023/1/1

homologizer: Phylogenetic phasing of gene copies into polyploid subgenomes

Methods in Ecology and Evolution

William A Freyman

Matthew G Johnson

Carl J Rothfels

2023/5

Phasing Gene Copies into Polyploid Subgenomes Using a Bayesian Phylogenetic Approach

William A Freyman

Carl J Rothfels

2023/2/2

PURC Provides Improved Sequence Inference for Polyploid Phylogenetics and Other Manifestations of the Multiple-Copy Problem

Peter Schafran

Fay-Wei Li

Carl J Rothfels

2023/2/2

A global phylogeny of Lycopodiaceae (Lycopodiales; lycophytes) with the description of a new genus, Brownseya, from Oceania

Taxon

De‐Kui Chen

Xin‐Mao Zhou

Carl J Rothfels

Lara D Shepherd

Ralf Knapp

...

2022/2

Cytogenetic, geographical, spore type and plastid haplotype data reveal cryptic patterns of species diversity in the cosmopolitan Cystopteris fragilis complex …

Botanical Journal of the Linnean Society

Libor Ekrt

Jiří Košnar

Carl J Rothfels

Kristýna Hanušová

Ondřej Hornych

...

2022/7/1

Polyploidy and microbiome associations mediate similar responses to pathogens in Arabidopsis

Current Biology

Elijah C Mehlferber

Michael J Song

Julianne Naomi Pelaez

Johan Jaenisch

Jeremy E Coate

...

2022/6/20

Travel Tales of a Worldwide Weed: Genomic Signatures of Plantago major L. Reveal Distinct Genotypic Groups With Links to Colonial Trade Routes

Frontiers in Plant Science

Natalie Iwanycki Ahlstrand

Shyam Gopalakrishnan

Filipe G Vieira

Vanessa C Bieker

Heidi M Meudt

...

2022/6/9

Inferring the total-evidence timescale of marattialean fern evolution in the face of model sensitivity

Systematic biology

Michael R May

Dori L Contreras

Michael A Sundue

Nathalie S Nagalingum

Cindy V Looy

...

2021/11/1

Three new Cenomanian conifers from El Chango (Chiapas, Mexico) offer a snapshot of the geographic mosaic of the Mesozoic conifer decline

bioRxiv

Ixchel González-Ramírez

Sergio RS Cevallos-Ferriz

Carl J Rothfels

2021/9/3

Comparative transcriptomics of a monocotyledonous geophyte reveals shared molecular mechanisms of underground storage organ formation

Evolution & Development

Carrie M Tribble

Jesús Martínez‐Gómez

Fernando Alzate‐Guarín

Carl J Rothfels

Chelsea D Specht

2021/5

Polyploid phylogenetics

Carl J Rothfels

2021/4

Organellomic data sets confirm a cryptic consensus on (unrooted) land‐plant relationships and provide new insights into bryophyte molecular evolution

American Journal of Botany

David Bell

Qianshi Lin

Wesley K Gerelle

Steve Joya

Ying Chang

...

2020/1

Wood anatomy of the neotropical liana lineage Paullinia L.(Sapindaceae)

IAWA journal

Joyce G Chery

Israel L da Cunha Neto

Marcelo R Pace

Pedro Acevedo-Rodríguez

Chelsea D Specht

...

2020/7/28

A basic dd RAD seq two‐enzyme protocol performs well with herbarium and silica‐dried tissues across four genera

Applications in Plant Sciences

Ingrid E Jordon‐Thaden

James B Beck

Catherine A Rushworth

Michael D Windham

Nicolas Diaz

...

2020/4

See List of Professors in Carl Rothfels University(University of California, Berkeley)

Co-Authors

H-index: 155
Doug Soltis

Doug Soltis

University of Florida

H-index: 81
Gane Ka-Shu Wong

Gane Ka-Shu Wong

University of Alberta

H-index: 77
Jim Leebens-Mack

Jim Leebens-Mack

University of Georgia

H-index: 58
Kathleen Pryer

Kathleen Pryer

Duke University

H-index: 52
Patrick P. Edger

Patrick P. Edger

Michigan State University

H-index: 44
Itay Mayrose

Itay Mayrose

Tel Aviv University

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