Brandi Cantarel, PhD

Brandi Cantarel, PhD

University of Texas Southwestern Medical Center

H-index: 35

North America-United States

About Brandi Cantarel, PhD

Brandi Cantarel, PhD, With an exceptional h-index of 35 and a recent h-index of 31 (since 2020), a distinguished researcher at University of Texas Southwestern Medical Center, specializes in the field of Genomics, Metagenomics, Microbiome, Bioinformatics.

His recent articles reflect a diverse array of research interests and contributions to the field:

PIEZO1 loss-of-function compound heterozygous mutations in the rare congenital human disorder Prune Belly Syndrome

NLRP12 downregulates the Wnt/β-catenin pathway via interaction with STK38 to suppress colorectal cancer

FLAG: Find, Label, Annotate Genomes, a fully automated tool for genome gene structural and functional annotation of highly fragmented non-model species

ANSWER: annotation software for electronic reporting

SCHOOL: software for clinical health in oncology for omics laboratories

Multiplex fragment analysis for flexible detection of all SARS-CoV-2 variants of concern

Racial and ethnic differences in genomic profiling of early onset colorectal cancer

A short plus long-amplicon based sequencing approach improves genomic coverage and variant detection in the SARS-CoV-2 genome

Brandi Cantarel, PhD Information

University

Position

Department of Bioinformatics

Citations(all)

37426

Citations(since 2020)

17396

Cited By

27637

hIndex(all)

35

hIndex(since 2020)

31

i10Index(all)

48

i10Index(since 2020)

47

Email

University Profile Page

University of Texas Southwestern Medical Center

Google Scholar

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Brandi Cantarel, PhD Skills & Research Interests

Genomics

Metagenomics

Microbiome

Bioinformatics

Top articles of Brandi Cantarel, PhD

Title

Journal

Author(s)

Publication Date

PIEZO1 loss-of-function compound heterozygous mutations in the rare congenital human disorder Prune Belly Syndrome

Nature communications

Nathalia G Amado

Elena D Nosyreva

David Thompson

Thomas J Egeland

Osita W Ogujiofor

...

2024/1/6

NLRP12 downregulates the Wnt/β-catenin pathway via interaction with STK38 to suppress colorectal cancer

The Journal of Clinical Investigation

Shahanshah Khan

Youn-Tae Kwak

Lan Peng

Shuiqing Hu

Brandi L Cantarel

...

2023/10/2

FLAG: Find, Label, Annotate Genomes, a fully automated tool for genome gene structural and functional annotation of highly fragmented non-model species

bioRxiv

William Troy

Joana Damas

Alexander J Titus

Brandi L Cantarel

2023/7/15

ANSWER: annotation software for electronic reporting

JCO Clinical Cancer Informatics

Chelsea Raulerson

Guillaume Jimenez

Benjamin Wakeland

Erika Villa

Jeffrey A SoRelle

...

2022/1

SCHOOL: software for clinical health in oncology for omics laboratories

Journal of Pathology Informatics

Chelsea K Raulerson

Erika C Villa

Jeremy A Mathews

Benjamin Wakeland

Yan Xu

...

2022/1/1

Multiplex fragment analysis for flexible detection of all SARS-CoV-2 variants of concern

Clinical chemistry

Andrew E Clark

Zhaohui Wang

Emily Ostman

Hui Zheng

Huiyu Yao

...

2022/8

Racial and ethnic differences in genomic profiling of early onset colorectal cancer

JNCI: Journal of the National Cancer Institute

David M Hein

Weiye Deng

MaryLena Bleile

Syed Ali Kazmi

Brooke Rhead

...

2022/5/1

A short plus long-amplicon based sequencing approach improves genomic coverage and variant detection in the SARS-CoV-2 genome

PLoS One

Carlos Arana

Chaoying Liang

Matthew Brock

Bo Zhang

Jinchun Zhou

...

2022/1/13

A pathogenic UFSP2 variant in an autosomal recessive form of pediatric neurodevelopmental anomalies and epilepsy

Genetics in Medicine

Min Ni

Bushra Afroze

Chao Xing

Chunxiao Pan

Yanqiu Shao

...

2021/5

A novel NIPBL-NACC1 gene fusion is characteristic of the cholangioblastic variant of intrahepatic cholangiocarcinoma

The American journal of surgical pathology

Pedram Argani

Doreen N Palsgrove

Robert A Anders

Steven C Smith

Carla Saoud

...

2021/11/1

Multiplex fragment analysis identifies SARS-CoV-2 variants

MedRxiv

Andrew E Clark

Zhaohui Wang

B Cantarel

Mohammed Kanchwala

Chao Xing

...

2021/4/16

MP51-07 MYOCARDIN LOSS-OF-FUNCTION VARIANTS DOWN-REGULATE SMOOTH MUSCLE DEVELOPMENT IN PRUNE BELLY SYNDROME (PBS)

The Journal of Urology

Alexandria N Fusco

Jeremy A Mathews

Caitlin T Coco

Thomas J Egeland

Brandi L Cantarel

...

2021/9

MP44-09 understanding prune belly syndrome at single cell resolution

The Journal of Urology

Nathalia Amado

Jeremy Mathews

Gervaise Henry

Alexandria Fusco

Thomas Egeland

...

2021/9

Outcome and immune correlates of a phase II trial of high-dose interleukin-2 and stereotactic ablative radiotherapy for metastatic renal cell carcinoma

Clinical Cancer Research

Raquibul Hannan

Osama Mohamad

Alberto Diaz de Leon

Subrata Manna

Laurentiu M Pop

...

2021/12/15

Interpretable deep learning uncovers cellular properties in label-free live cell images that are predictive of highly metastatic melanoma

Cell systems

Assaf Zaritsky

Andrew R Jamieson

Erik S Welf

Andres Nevarez

Justin Cillay

...

2021/7/21

Multi-tiered analyses of honey bees that resist or succumb to parasitic mites and viruses

BMC genomics

Daniel B Weaver

Brandi L Cantarel

Christine G Elsik

Dawn L Boncristiani

Jay D Evans

2021/12

Method of machine learning, employing bayesian latent class inference: combining multiple genomic feature detection algorithms to produce an integrated genomic feature set with …

2021/6/10

A renal cell carcinoma tumorgraft platform to advance precision medicine

Cell reports

Roy Elias

Vanina T Tcheuyap

Akash K Kaushik

Nirmish Singla

Ming Gao

...

2021/11/23

GEAMP, a novel gastroesophageal junction carcinoma cell line derived from a malignant pleural effusion

Laboratory Investigation

Wei Zhang

Taylor A Williams

Ankur S Bhagwath

Jared S Hiermann

Craig D Peacock

...

2020/1

Mitochondrial dysfunction during loss of prohibitin 1 triggers Paneth cell defects and ileitis

Gut

Dakota N Jackson

Marina Panopoulos

William L Neumann

Kevin Turner

Brandi L Cantarel

...

2020/11/1

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