Bingqiang Liu
Shandong University
H-index: 22
Asia-China
Top articles of Bingqiang Liu
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
CEMIG: prediction of the cis-regulatory motif using the de Bruijn graph from ATAC-seq | Briefings in Bioinformatics | Yizhong Wang Yang Li Cankun Wang Chan-Wang Jerry Lio Qin Ma | 2024/1/1 |
Highly accurate diagnosis of pancreatic cancer by integrative modeling using gut microbiome and exposome data | iScience | Yuli Zhang Haohong Zhang Bingqiang Liu Kang Ning | 2024/2/21 |
Graph Fourier transform for spatial omics representation and analyses of complex organs | Qin Ma Yuzhou Chang Jixin Liu Yi Jiang Anjun Ma | 2024/2/15 | |
A weighted two-stage sequence alignment framework to identify motifs from ChIP-exo data | Patterns | Yang Li Yizhong Wang Cankun Wang Anjun Ma Qin Ma | 2024/2/2 |
MarsGT: Multi-omics analysis for rare population inference using single-cell graph transformer | Nature Communications | Xiaoying Wang Maoteng Duan Jingxian Li Anjun Ma Gang Xin | 2024/1/6 |
Inference of disease-associated microbial gene modules based on metagenomic and metatranscriptomic data | Computers in Biology and Medicine | Zhaoqian Liu Qi Wang Anjun Ma Shaohong Feng Dongjun Chung | 2023/10/1 |
Computational methods and challenges in analyzing intratumoral microbiome data | Qi Wang Zhaoqian Liu Anjun Ma Zihai Li Bingqiang Liu | 2023/7/1 | |
An explainable graph neural framework to identify cancer-associated intratumoral microbial communities | bioRxiv | Zhaoqian Liu Yuhan Sun Anjun Ma Xiaoying Wang Dong Xu | 2023/4/18 |
Single-cell biological network inference using a heterogeneous graph transformer | Nature Communications | Anjun Ma Xiaoying Wang Jingxian Li Cankun Wang Tong Xiao | 2023/2/21 |
DESSO-DB: A web database for sequence and shape motif analyses and identification | Computational and Structural Biotechnology Journal | Xiaoying Wang Cankun Wang Lang Li Qin Ma Anjun Ma | 2022/1/1 |
Enhancer-driven gene regulatory networks inference from single-cell RNA-seq and ATAC-seq data | bioRxiv | Yang Li Anjun Ma Yizhong Wang Cankun Wang Shuo Chen | 2022/12/15 |
Spatial omics representation and functional tissue module inference using graph Fourier transform | bioRxiv | Yuzhou Chang Jixin Liu Anjun Ma Sizun Jiang Jordan Krull | 2022/12/13 |
Deep transfer learning of cancer drug responses by integrating bulk and single-cell RNA-seq data | Nature Communications | Junyi Chen Xiaoying Wang Anjun Ma Qi-En Wang Bingqiang Liu | 2022/10/30 |
Leveraging existing 16SrRNA microbial data to define a composite biomarker for autism spectrum disorder | Microbiology Spectrum | YuShuang Xu YiHua Wang JinShuang Xu Yu Song BingQiang Liu | 2022/8/31 |
Define and visualize pathological architectures of human tissues from spatially resolved transcriptomics using deep learning | bioRxiv | Yuzhou Chang Fei He Juexin Wang Shuo Chen Jingyi Li | 2021/7/9 |
The functional determinants in the organization of bacterial genomes | Zhaoqian Liu Jingtong Feng Bin Yu Qin Ma Bingqiang Liu | 2021/5 | |
Deepmaps: Single-cell biological network inference using heterogeneous graph transformer | Biorxiv | Anjun Ma Xiaoying Wang Cankun Wang Jingxian Li Tong Xiao | 2021/11/3 |
Network analyses in microbiome based on high-throughput multi-omics data | Zhaoqian Liu Anjun Ma Ewy Mathé Marlena Merling Qin Ma | 2021/3 | |
A novel computational framework for genome-scale alternative transcription units prediction | Briefings in Bioinformatics | Qi Wang Zhaoqian Liu Bo Yan Wen-Chi Chou Laurence Ettwiller | 2021/11 |
Analysis of next-and third-generation RNA-Seq data reveals the structures of alternative transcription units in bacterial genomes | bioRxiv | Qi Wang Zhaoqian Liu Bo Yan Wen-Chi Chou Laurence Ettwiller | 2021/1/4 |
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