Benjamin Haibe-Kains

Benjamin Haibe-Kains

University of Toronto

H-index: 85

North America-Canada

About Benjamin Haibe-Kains

Benjamin Haibe-Kains, With an exceptional h-index of 85 and a recent h-index of 64 (since 2020), a distinguished researcher at University of Toronto, specializes in the field of Bioinformatics, Machine Learning, Genomics, Computational Biology, Biomedicine.

His recent articles reflect a diverse array of research interests and contributions to the field:

The Auto-Lindberg Project: Standardized Target Nomenclature in Radiation Oncology Enables Real-World Data Extraction From Radiation Treatment Plans

Abstract C059: Hub gene analysis identifies CAD as a potential mediator for drug resistance in pancreatic cancer

Integrate Any Omics: Towards genome-wide data integration for patient stratification

255 Predicting patient-level extranodal extension using pre-treatment computed tomography imaging

P745: High-fidelity whole genome sequencing of FFPE tumor-derived nucleic acids stored at ambient temperature

98 An open-source foundation for head and neck radiomics

Making head and neck cancer clinical data Findable-Accessible-Interoperable-Reusable to support multi-institutional collaboration and federated learning

168 Automated analysis of elective neck radiation therapy patterns in patients with head and neck cancer

Benjamin Haibe-Kains Information

University

Position

Scientist (Principal Investigator), Princess Margaret Cancer Centre, University Health Network

Citations(all)

34517

Citations(since 2020)

19719

Cited By

22255

hIndex(all)

85

hIndex(since 2020)

64

i10Index(all)

197

i10Index(since 2020)

176

Email

University Profile Page

University of Toronto

Google Scholar

View Google Scholar Profile

Benjamin Haibe-Kains Skills & Research Interests

Bioinformatics

Machine Learning

Genomics

Computational Biology

Biomedicine

Top articles of Benjamin Haibe-Kains

Title

Journal

Author(s)

Publication Date

The Auto-Lindberg Project: Standardized Target Nomenclature in Radiation Oncology Enables Real-World Data Extraction From Radiation Treatment Plans

International Journal of Radiation Oncology* Biology* Physics

Andrew Hope

Jun Won Kim

Michal Kazmierski

Mattea Welch

Joseph Marsilla

...

2024/1/1

Abstract C059: Hub gene analysis identifies CAD as a potential mediator for drug resistance in pancreatic cancer

Cancer Research

Foram Vyas

Barbara Grünwald

Kazeera Aliar

Gun Ho Jang

Grainne O'Kane

...

2024/1/16

Integrate Any Omics: Towards genome-wide data integration for patient stratification

arXiv preprint arXiv:2401.07937

Shihao Ma

Andy GX Zeng

Benjamin Haibe-Kains

Anna Goldenberg

John E Dick

...

2024/1/15

255 Predicting patient-level extranodal extension using pre-treatment computed tomography imaging

Radiotherapy and Oncology

Sejin Kim

Andrew J Hope

Shao Hui Huang

Eugene Yu

Scott Bratman

...

2024/3/1

P745: High-fidelity whole genome sequencing of FFPE tumor-derived nucleic acids stored at ambient temperature

Genetics in Medicine Open

Farnoosh Abbas-Aghababazadeh

Lee Organick

Michael Blas

Benjamin Haibe-Kains

James Banal

...

2024/1/1

98 An open-source foundation for head and neck radiomics

Radiotherapy and Oncology

Katy L Scott

Sejin Kim

Jermiah J Joseph

Matthew Boccalon

Mattea Welch

...

2024/3/1

Making head and neck cancer clinical data Findable-Accessible-Interoperable-Reusable to support multi-institutional collaboration and federated learning

BJR| Artificial Intelligence

Varsha Gouthamchand

Ananya Choudhury

Frank JP Hoebers

Frederik WR Wesseling

Mattea Welch

...

2024/1/1

168 Automated analysis of elective neck radiation therapy patterns in patients with head and neck cancer

Radiotherapy and Oncology

Joseph Marsilla

Jun Won Kim

Sejin Kim

Mattea Welch

Shao Hui Huang

...

2024/3/1

Re: Deng and Heybati

JNCI: Journal of the National Cancer Institute

Ronald Chow

Fei-Fei Liu

Benjamin Haibe-Kains

Michael Lock

Srinivas Raman

2024/1/1

RADCURE: An open‐source head and neck cancer CT dataset for clinical radiation therapy insights

Medical Physics

Mattea L Welch

Sejin Kim

Andrew J Hope

Shao Hui Huang

Zhibin Lu

...

2024/2/16

Detection of circular RNAs and their potential as biomarkers predictive of drug response

bioRxiv

Julia Nguyen

Anthony Mammoliti

Sisira Kadambat Nair

Emily So

Farnoosh Abbas-Aghababazadeh

...

2023/1/9

GraphComm: a graph-based deep learning method to predict cell-cell communication in single-cell RNAseq data

bioRxiv

Emily So

Sikander Hayat

Sisira Kadambat Nair

Bo Wang

Benjamin Haibe-Kains

2023/4/27

Multi-institutional prognostic modeling in head and neck cancer: evaluating impact and generalizability of deep learning and radiomics

Cancer Research Communications

Michal Kazmierski

Mattea Welch

Sejin Kim

Chris McIntosh

Katrina Rey-McIntyre

...

2023/6/29

Heterogeneity in leukemia cells that escape drug-induced senescence-like state

Cell Death & Disease

David Miller

Kyra Kerkhofs

Farnoosh Abbas-Aghababazadeh

Sahib Singh Madahar

Mark D Minden

...

2023/8/5

Safety, Immunologic, and Clinical Activity of Durvalumab in Combination with Olaparib or Cediranib in Advanced Leiomyosarcoma: Results of the DAPPER Clinical Trial.

Clinical Cancer Research

Abdulazeez Salawu

Ben X Wang

Ming Han

Caryn Geady

Alya Heirali

...

2023/10/13

The impact of violating the independence assumption in meta-analysis on biomarker discovery

Frontiers in Genetics

Farnoosh Abbas-Aghababazadeh

Wei Xu

Benjamin Haibe-Kains

2023/1/4

Use of artificial intelligence for cancer clinical trial enrollment: a systematic review and meta-analysis

Ronald Chow

Julie Midroni

Jagdeep Kaur

Gabriel Boldt

Geoffrey Liu

...

2023/4/1

Deciphering the tumor microenvironment (TME) dynamics in advanced colorectal (CRC) and pancreatic cancers (PDAC) treated with durvalumab (D) with olaparib (O) or cediranib (C …

Alberto Hernando-Calvo

Ming Han

Olubukola Ayodele

Ben X Wang

Maria Vila-Casadesús

...

2023/8

Immune correlates of outcome in patients with leiomyosarcoma (LMS) treated with durvalumab plus olaparib or cediranib: Transcriptome analysis from the DAPPER study.

Abdulazeez Salawu

Ming Han

Abha A Gupta

Hal Berman

Ben X Wang

...

2023/6/1

Abstract: 228P Biomarker discovery via meta-analysis of immunotherapy clinical trials in cancer

Annals of Oncology

B Haibe-Kains

2023/10/1

See List of Professors in Benjamin Haibe-Kains University(University of Toronto)

Co-Authors

H-index: 205
Adrian L Harris

Adrian L Harris

University of Oxford

H-index: 122
Philippe Lambin

Philippe Lambin

Universiteit Maastricht

H-index: 112
John Quackenbush

John Quackenbush

Harvard University

H-index: 86
Hugo Aerts

Hugo Aerts

Harvard University

H-index: 68
Christine Desmedt

Christine Desmedt

Katholieke Universiteit Leuven

H-index: 66
Gianluca Bontempi

Gianluca Bontempi

Université Libre de Bruxelles

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