Asa Ben-Hur

Asa Ben-Hur

Colorado State University

H-index: 46

North America-United States

About Asa Ben-Hur

Asa Ben-Hur, With an exceptional h-index of 46 and a recent h-index of 29 (since 2020), a distinguished researcher at Colorado State University, specializes in the field of Bioinformatics, Machine learning.

His recent articles reflect a diverse array of research interests and contributions to the field:

Using large scale transfer learning to highlight the role of chromatin state in intron retention

The spectrum of pre‐mRNA splicing in autism

A conserved interdomain microbial network underpins cadaver decomposition despite environmental variables

Evidence for the role of transcription factors in the co-transcriptional regulation of intron retention

Protein quality assessment with a loss function designed for high-quality decoys

Cross-linking breast tumor transcriptomic states and tissue histology

Phenotyping and predicting wheat spike characteristics using image analysis and machine learning

Package ‘RAMClustR’

Asa Ben-Hur Information

University

Position

Computer Science

Citations(all)

15101

Citations(since 2020)

6239

Cited By

11432

hIndex(all)

46

hIndex(since 2020)

29

i10Index(all)

80

i10Index(since 2020)

59

Email

University Profile Page

Colorado State University

Google Scholar

View Google Scholar Profile

Asa Ben-Hur Skills & Research Interests

Bioinformatics

Machine learning

Top articles of Asa Ben-Hur

Title

Journal

Author(s)

Publication Date

Using large scale transfer learning to highlight the role of chromatin state in intron retention

bioRxiv

Ahmed Daoud

Asa Ben-Hur

2024

The spectrum of pre‐mRNA splicing in autism

Eden Engal

Zhenwei Zhang

Ophir Geminder

Shiri Jaffe‐Herman

Gillian Kay

...

2024/3

A conserved interdomain microbial network underpins cadaver decomposition despite environmental variables

Nature Microbiology

Zachary M Burcham

Aeriel D Belk

Bridget B McGivern

Amina Bouslimani

Parsa Ghadermazi

...

2024/2/12

Evidence for the role of transcription factors in the co-transcriptional regulation of intron retention

Genome Biology

Fahad Ullah

Saira Jabeen

Maayan Salton

Anireddy SN Reddy

Asa Ben-Hur

2023/3/22

Protein quality assessment with a loss function designed for high-quality decoys

Frontiers in Bioinformatics

Soumyadip Roy

Asa Ben-Hur

2023

Cross-linking breast tumor transcriptomic states and tissue histology

Cell Reports Medicine

Muhammad Dawood

Mark Eastwood

Mostafa Jahanifar

Lawrence Young

Asa Ben-Hur

...

2023/12/19

Phenotyping and predicting wheat spike characteristics using image analysis and machine learning

The Plant Phenome Journal

Mik Hammers

Zachary J Winn

Asa Ben‐Hur

Dylan Larkin

Jamison Murry

...

2023/12

Package ‘RAMClustR’

Corey D Broeckling

Fayyaz Afsar

Steffen Neumann

Asa Ben-Hur

Jessica Prenni

...

2023/10/20

Data-driven modelling of gene expression states in breast cancer and their prediction from routine whole slide images

bioRxiv

Muhammad Dawood

Mark Eastwood

Mostafa Jahanifar

Lawrence Young

Asa Ben-Hur

...

2023/4/16

RODAN: a fully convolutional architecture for basecalling nanopore RNA sequencing data

BMC bioinformatics

Don Neumann

Anireddy SN Reddy

Asa Ben-Hur

2022/4/20

On the choice of negative examples for prediction of host-pathogen protein interactions

Frontiers in Bioinformatics

Don Neumann

Soumyadip Roy

Fayyaz Ul Amir Afsar Minhas

Asa Ben-Hur

2022/12/15

Insights into performance evaluation of compound–protein interaction prediction methods

Bioinformatics

Adiba Yaseen

Imran Amin

Naeem Akhter

Asa Ben-Hur

Fayyaz Minhas

2022/9/1

A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis

Genome Biology

Zhang et al.

2022

Extended Archaeal Histone-Based Chromatin Structure Regulates Global Gene Expression in Thermococcus kodakarensis

Frontiers in Microbiology

Travis J Sanders

Fahad Ullah

Alexandra M Gehring

Brett W Burkhart

Robert L Vickerman

...

2021/5/13

A Self-Attention model for inferring cooperativity between regulatory features

Nucleic Acids Research

Fahad Ullah

Asa Ben-Hur

2021

Improving COVID-19 testing efficiency using guided agglomerative sampling

bioRxiv

Fayyaz Minhas

Dimitris Grammatopoulos

Lawrence Young

Imran Amin

David Snead

...

2020/4/14

Digital image analysis of heterogeneous tuberculosis pulmonary pathology in non-clinical animal models using deep convolutional neural networks

Scientific reports

Bryce C Asay

Blake Blue Edwards

Jenna Andrews

Michelle E Ramey

Jameson D Richard

...

2020/4/8

Transcriptome Analysis of Drought-Resistant and Drought-Sensitive Sorghum (Sorghum bicolor) Genotypes in Response to PEG-Induced Drought Stress

International Journal of Molecular Sciences

Salah E Abdel-Ghany

Fahad Ullah

Asa Ben-Hur

Anireddy SN Reddy

2020/1/24

Decoding co-/post-transcriptional complexities of plant transcriptomes and epitranscriptome using next-generation sequencing technologies

Anireddy SN Reddy

Jie Huang

Naeem H Syed

Asa Ben-Hur

Suomeng Dong

...

2020/12/18

Splicing factor transcript abundance in saliva as a diagnostic tool for breast cancer

Genes

Mercedes Bentata

Guy Morgenstern

Yuval Nevo

Gillian Kay

Avital Granit Mizrahi

...

2020/8/3

See List of Professors in Asa Ben-Hur University(Colorado State University)

Co-Authors

H-index: 107
William Stafford Noble

William Stafford Noble

University of Washington

H-index: 92
Robert Shafer

Robert Shafer

Stanford University

H-index: 76
Roded Sharan

Roded Sharan

Tel Aviv University

H-index: 70
Anireddy S.N. Reddy

Anireddy S.N. Reddy

Colorado State University

H-index: 56
Douglas Brutlag

Douglas Brutlag

Stanford University

H-index: 47
Shmuel Fishman

Shmuel Fishman

Technion - Israel Institute of Technology

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