Anne E. Carpenter
Harvard University
H-index: 76
North America-United States
Top articles of Anne E. Carpenter
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
Bringing computation to biology by bridging the last mile | Nature cell biology | Anne E Carpenter Shantanu Singh | 2024/1 |
From pixels to phenotypes: Integrating image-based profiling with cell health data as BioMorph features improves interpretability | Molecular Biology of the Cell | Srijit Seal Jordi Carreras-Puigvert Shantanu Singh Anne E Carpenter Ola Spjuth | 2024/3/1 |
Learning representations for image-based profiling of perturbations | Nature Communications | Nikita Moshkov Michael Bornholdt Santiago Benoit Matthew Smith Claire McQuin | 2024/2/21 |
Insights into Drug Cardiotoxicity from Biological and Chemical Data: The First Public Classifiers for FDA Drug-Induced Cardiotoxicity Rank | Journal of Chemical Information and Modeling | Srijit Seal Ola Spjuth Layla Hosseini-Gerami Miguel García-Ortegón Shantanu Singh | 2024/2/1 |
High-dimensional phenotyping to define the genetic basis of cellular morphology | Nature Communications | Matthew Tegtmeyer Jatin Arora Samira Asgari Beth A Cimini Ajay Nadig | 2024/1/6 |
A versatile information retrieval framework for evaluating profile strength and similarity | bioRxiv | Alexandr A Kalinin John Arevalo Loan Vulliard Erik Serrano Hillary Tsang | 2024 |
Three million images and morphological profiles of cells treated with matched chemical and genetic perturbations | Nature Methods | Srinivas Niranj Chandrasekaran Beth A Cimini Amy Goodale Lisa Miller Maria Kost-Alimova | 2024/4/9 |
Optimizing the Cell Painting assay for image-based profiling | Beth A Cimini Srinivas Niranj Chandrasekaran Maria Kost-Alimova Lisa Miller Amy Goodale | 2023/7 | |
Evaluating batch correction methods for image-based cell profiling | bioRxiv | John Arevalo Ellen Su Robert van Dijk Anne E Carpenter Shantanu Singh | 2023/9/17 |
nELISA: A high-throughput, high-plex platform enables quantitative profiling of the secretome | bioRxiv | Milad Dagher Grant Ongo Nathaniel Robichaud Jinglin Kong Woojong Rho | 2023/4/18 |
Pseudo-labeling enhanced by privileged information and its application to in situ sequencing images | arXiv preprint arXiv:2306.15898 | Marzieh Haghighi Mario C Cruz Erin Weisbart Beth A Cimini Avtar Singh | 2023/6/28 |
Pervasive mislocalization of pathogenic coding variants underlying human disorders | bioRxiv | Jessica Lacoste Marzieh Haghighi Shahan Haider Zhen-Yuan Lin Dmitri Segal | 2023/9/5 |
Reproducible image-based profiling with Pycytominer | ArXiv | Erik Serrano Srinivas Niranj Chandrasekaran Dave Bunten Kenneth I Brewer Jenna Tomkinson | 2023/11/22 |
Interpreting Image‐based Profiles using Similarity Clustering and Single‐Cell Visualization | Current Protocols | Fernanda Garcia‐Fossa Mario Costa Cruz Marzieh Haghighi Marcelo Bispo de Jesus Shantanu Singh | 2023/3 |
Predicting compound activity from phenotypic profiles and chemical structures | Nature Communications | Nikita Moshkov Tim Becker Kevin Yang Peter Horvath Vlado Dancik | 2023/4/8 |
FALCON systematically interrogates free fatty acid biology and identifies a novel mediator of lipotoxicity | Cell metabolism | Nicolas Wieder Juliana Coraor Fried Choah Kim Eriene-Heidi Sidhom Matthew R Brown | 2023/5/2 |
A genome-wide atlas of human cell morphology | bioRxiv | Meraj Ramezani Julia Bauman Avtar Singh Erin Weisbart John Yong | 2023/8/7 |
Deductive automated pollen classification in environmental samples via exploratory deep learning and imaging flow cytometry | New Phytologist | Claire M Barnes Ann L Power Daniel G Barber Richard K Tennant Richard T Jones | 2023/11 |
Assessing the performance of the Cell Painting assay across different imaging systems | Cytometry Part A | Callum Tromans‐Coia Nasim Jamali Hamdah Shafqat Abbasi Kenneth A Giuliano Mai Hagimoto | 2023/10/3 |
Rapid label-free imaging-based evaluation of cancer dependencies in zero-passage primary cells | Cancer Research | Mushriq Al-Jazrawe Csaba Molnar Elisabeth Abeyta Steven Blum Niklas Rindtorff | 2023/4/4 |
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