Amy Willis
University of Washington
H-index: 24
North America-United States
Top articles of Amy Willis
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
A distinct Fusobacterium nucleatum clade dominates the colorectal cancer niche | Nature | Martha Zepeda-Rivera Samuel S Minot Heather Bouzek Hanrui Wu Aitor Blanco-Míguez | 2024/3/20 |
A cryptic plasmid is among the most numerous genetic elements in the human gut | Cell | Emily C Fogarty Matthew S Schechter Karen Lolans Madeline L Sheahan Iva Veseli | 2024/2/29 |
Estimating Fold Changes from Partially Observed Outcomes with Applications in Microbial Metagenomics | arXiv preprint arXiv:2402.05231 | David S Clausen Amy D Willis | 2024/2/7 |
Host DNA depletion on frozen human respiratory samples enables successful metagenomic sequencing for microbiome studies | Minsik Kim Raymond C Parrish II Viral S Shah Matthew Ross Juwan Cormier | 2024/1/23 | |
Analyzing microbial evolution through gene and genome phylogenies | bioRxiv | Sarah Teichman Michael D Lee Amy D Willis | 2023/8/15 |
Microbes with higher metabolic independence are enriched in human gut microbiomes under stress | bioRxiv | Iva Veseli Yiqun T Chen Matthew S Schechter Chiara Vanni Emily C Fogarty | 2023/5/26 |
A highly conserved and globally prevalent cryptic plasmid is among the most numerous mobile genetic elements in the human gut | bioRxiv | Emily C Fogarty Matthew S Schechter Karen Lolans Madeline L Sheahan Iva Veseli | 2023/3/25 |
Structure-informed microbial population genetics elucidate selective pressures that shape protein evolution | Science Advances | Evan Kiefl Ozcan C Esen Samuel E Miller Kourtney L Kroll Amy D Willis | 2023/2/22 |
Differences in gut metagenomes between dairy workers and community controls: a cross-sectional study | bioRxiv | Pauline Trinh Marilyn C Roberts Peter M Rabinowitz Amy D Willis | 2023 |
happi: a hierarchical approach to pangenomics inference | Genome Biology | Pauline Trinh David S Clausen Amy D Willis | 2023/9/29 |
Modeling complex measurement error in microbiome experiments | arXiv preprint arXiv:2204.12733 | David S Clausen Amy D Willis | 2022/4/27 |
rigr: Regression, Inference, and General Data Analysis Tools in R | Journal of Open Source Software | Yiqun T Chen Brian D Williamson Taylor Okonek Charles J Wolock Andrew J Spieker | 2022/12/26 |
Estimating diversity in networked ecological communities | Biostatistics | Amy D Willis Bryan D Martin | 2022/1 |
Evaluating replicability in microbiome data | Biostatistics | David S Clausen Amy D Willis | 2022/10 |
A multiview model for relative and absolute microbial abundances | Biometrics | Brian D Williamson James P Hughes Amy D Willis | 2022/9 |
Meta-analysis of metagenomes via machine learning and assembly graphs reveals strain switches in Crohn’s disease | bioRxiv | Taylor E Reiter Luiz Irber Alicia A Gingrich Dylan Haynes N Tessa Pierce-Ward | 2022/7/5 |
Segment number threshold determines juvenile onset of germline cluster expansion in Platynereis dumerilii | Journal of Experimental Zoology Part B: Molecular and Developmental Evolution | Emily Kuehn David S Clausen Ryan W Null Bria M Metzger Amy D Willis | 2022/6 |
geneshot: gene-level metagenomics identifies genome islands associated with immunotherapy response | Genome Biology | Samuel S Minot Kevin C Barry Caroline Kasman Jonathan L Golob Amy D Willis | 2021/5/5 |
Tuning parameter selection for a penalized estimator of species richness | Journal of Applied Statistics | Alex Paynter Amy D Willis | 2021/4/26 |
Estimation of cell lineage trees by maximum-likelihood phylogenetics | The annals of applied statistics | Jean Feng WILLIAM S DEWITT III Aaron McKenna Noah Simon Amy D Willis | 2021/3 |
