Alberto Perez
University of Florida
H-index: 38
North America-United States
Top articles of Alberto Perez
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
Advancing Molecular Dynamics: Toward Standardization, Integration, and Data Accessibility in Structural Biology | Marcelo Caparotta Alberto Perez | 2024/2/28 | |
Ranking peptide binders by affinity with AlphaFold | Angewandte Chemie International Edition | Liwei Chang Alberto Perez | 2023/2/6 |
CryoFold 2.0: Cryo-EM Structure Determination with MELD | The Journal of Physical Chemistry A | Liwei Chang Arup Mondal Justin L MacCallum Alberto Perez | 2023/4/21 |
When MELD Meets GaMD: Accelerating Biomolecular Landscape Exploration | Journal of Chemical Theory and Computation | Marcelo Caparotta Alberto Perez | 2023/12/1 |
Assessing a computational pipeline to identify binding motifs to the α2β1 integrin | Frontiers in Chemistry | Qianchen Liu Alberto Perez | 2023 |
Computational Study of Driving Forces in ATSP, PDIQ, and P53 Peptide Binding: C═ O··· C═ O Tetrel Bonding Interactions at Work | Journal of Chemical Information and Modeling | Lijun Lang Antonio Frontera Alberto Perez Antonio Bauzá | 2023/4/4 |
GENERALIST: A latent space based generative model for protein sequence families | PLOS Computational Biology | Hoda Akl Brooke Emison Xiaochuan Zhao Arup Mondal Alberto Perez | 2023/11/27 |
Structure Determination of Challenging Protein–Peptide Complexes Combining NMR Chemical Shift Data and Molecular Dynamics Simulations | Journal of chemical information and modeling | Arup Mondal GVT Swapna Maria M Lopez Laura Klang Jingzhou Hao | 2023/3/29 |
Hybrid computational methods combining experimental information with molecular dynamics | Arup Mondal Stefan Lenz Justin L MacCallum Alberto Perez | 2023/8/1 | |
Structural predictions of protein–DNA binding: MELD-DNA | Nucleic Acids Research | Reza Esmaeeli Antonio Bauzá Alberto Perez | 2023/2/28 |
Biophysics at the dawn of exascale computers | Biophysical journal | Abhishek Singharoy Alberto Pérez Chris Chipot | 2023/7/25 |
Molecular Modeling of Self-Assembling Peptides | Stephen J Jones Alberto Perez | 2023/2/16 | |
Engineering highly thermostable Cas12b via de novo structural analyses for one-pot detection of nucleic acids | Cell Reports Medicine | Long T. Nguyen Santosh R. Rananaware Lilia G. Yang Nicolas C. Macaluso Julio E. Ocana-Ortiz | 2023/5/8 |
Modelling peptide–protein complexes: docking, simulations and machine learning | Arup Mondal Liwei Chang Alberto Perez | 2022/1 | |
Improving the analysis of biological ensembles through extended similarity measures | Physical Chemistry Chemical Physics | Liwei Chang Alberto Perez Ramón Alain Miranda-Quintana | 2022 |
Towards rational computational peptide design | Frontiers in Bioinformatics | Liwei Chang Arup Mondal Alberto Perez | 2022/10/21 |
Deciphering the folding mechanism of proteins G and L and their mutants | Journal of the American Chemical Society | Liwei Chang Alberto Perez | 2022/8/5 |
Searching for Low Probability Opening Events in a DNA Sliding Clamp | Life | Reza Esmaeeli Benedict Andal Alberto Perez | 2022/2/9 |
CryoFold: Determining protein structures and data-guided ensembles from cryo-EM density maps | Matter | Mrinal Shekhar Genki Terashi Chitrak Gupta Daipayan Sarkar Gaspard Debussche | 2021/10/6 |
Importance of Anion− π Interactions in RNA GAAA and GGAG Tetraloops: A Combined MD and QM Study | Journal of chemical theory and computation | Reza Esmaeeli María de Las Nieves Piña Antonio Frontera Alberto Perez Antonio Bauza | 2021/9/29 |
Co-Authors
