Adam Liwo
Uniwersytet Gdanski
H-index: 57
Europe-Poland
Top articles of Adam Liwo
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
Multi-GPU UNRES for scalable coarse-grained simulations of very large protein systems | Computer Physics Communications | Krzysztof M Ocetkiewicz Cezary Czaplewski Henryk Krawczyk Agnieszka G Lipska Adam Liwo | 2024/5/1 |
Assessment of Two Restraint Potentials for Coarse-Grained Chemical-Cross-Link-Assisted Modeling of Protein Structures | Journal of Chemical Information and Modeling | Mateusz Leśniewski Maciej Pyrka Cezary Czaplewski Nguyen Truong Co Yida Jiang | 2024/2/12 |
Multi-GPU-powered UNRES package for physics-based coarse-grained simulations of structure, dynamics, and thermodynamics of protein systems at biological size-and timescales | Biophysical Journal | Cezary R Czaplewski Pawel Czarnul Henryk Krawczyk Agnieszka G Lipska Emilia A Lubecka | 2024/2/8 |
Application of heterobifunctional cross-links pseudopotentials in UNRES | Maciej Pyrka Mateusz Leśniewski Chun Tang Józef Adam Liwo | 2023 | |
Long‐time scale simulations of virus‐like particles from three human‐norovirus strains | Journal of Computational Chemistry | Agnieszka G Lipska Adam K Sieradzan Cezary Czaplewski Andrea D Lipińska Krzysztof M Ocetkiewicz | 2023/6/15 |
Impact of AlphaFold on structure prediction of protein complexes: the CASP15‐CAPRI experiment | Proteins: Structure, Function, and Bioinformatics | Marc F Lensink Guillaume Brysbaert Nessim Raouraoua Paul A Bates Marco Giulini | 2023/12 |
Ligand binding of interleukin-8: a comparison of glycosaminoglycans and acidic peptides | Physical Chemistry Chemical Physics | Christian Schulze Annemarie Danielsson Adam Liwo Daniel Huster Sergey A Samsonov | 2023 |
Long-time dynamics of selected molecular-motor components using a physics-based coarse-grained approach | Biomolecules | Adam Liwo Maciej Pyrka Cezary Czaplewski Xubiao Peng Antti J Niemi | 2023/6/5 |
Toward Consistent Physics-Based Modeling of Local Backbone Structures and Chirality Change of Proteins in Coarse-Grained Approaches | Agnieszka G Lipska Adam K Sieradzan Sümeyye Atmaca Cezary Czaplewski Adam Liwo | 2023/10/27 | |
UNRES-GPU for physics-based coarse-grained simulations of protein systems at biological time-and size-scales | Bioinformatics | Krzysztof M Ocetkiewicz Cezary Czaplewski Henryk Krawczyk Agnieszka G Lipska Adam Liwo | 2023/6/1 |
Pragmatic coarse-graining of proteins: models and applications | Luís Borges-Araújo Ilias Patmanidis Akhil P Singh Lucianna HS Santos Adam K Sieradzan | 2023/10/3 | |
Optimization of parallel implementation of UNRES package for coarse‐grained simulations to treat large proteins | Journal of computational chemistry | Adam K Sieradzan Jordi Sans‐Duñó Emilia A Lubecka Cezary Czaplewski Agnieszka G Lipska | 2023/2/5 |
Extension of the SUGRES-1P Coarse-Grained Model of Polysaccharides to Heparin | Journal of Chemical Theory and Computation | Annemarie Danielsson Sergey A Samsonov Adam Liwo Adam K Sieradzan | 2023/8/16 |
Protein folds vs. protein folding: Differing questions, different challenges | Proceedings of the National Academy of Sciences | Shi-Jie Chen Mubashir Hassan Robert L Jernigan Kejue Jia Daisuke Kihara | 2023/1/3 |
Interplay of heparan sulfate chains with the core proteins of syndecans 2 and 4 | Proteoglycan Research | Martyna Maszota‐Zieleniak Adam Liwo Sylvie Ricard‐Blum Sergey A Samsonov | 2023/7 |
Prediction of aggregation of biologically-active peptides with the UNRES coarse-grained model | Biomolecules | Iga Biskupek Cezary Czaplewski Justyna Sawicka Emilia Iłowska Maria Dzierżyńska | 2022/8/18 |
Physics-based coarse-grained modeling in bio-and nanochemistry | Practical Aspects of Computational Chemistry V | Adam Liwo Adam K Sieradzan Agnieszka S Karczyńska Emilia A Lubecka Sergey A Samsonov | 2022 |
Theoretical investigation of the coronavirus SARS-CoV-2 (COVID-19) infection mechanism and selectivity | Molecules | Iga Biskupek Adam Sieradzan Cezary Czaplewski Adam Liwo Adam Lesner | 2022/3/24 |
Probing protein aggregation using the coarse-grained UNRES force field | Ana V Rojas Gia G Maisuradze Harold A Scheraga Adam Liwo | 2022/2/15 | |
Improvements and new functionalities of UNRES server for coarse-grained modeling of protein structure, dynamics, and interactions | Frontiers in Molecular Biosciences | Rafał Ślusarz Emilia A Lubecka Cezary Czaplewski Adam Liwo | 2022/12/14 |
Co-Authors
