Aakash Saha

Aakash Saha

University of California, Riverside

H-index: 7

North America-United States

About Aakash Saha

Aakash Saha, With an exceptional h-index of 7 and a recent h-index of 7 (since 2020), a distinguished researcher at University of California, Riverside, specializes in the field of Biophysics, Computational Biology, Computational Chemistry, CRISPR-Cas.

His recent articles reflect a diverse array of research interests and contributions to the field:

An alpha-helical lid guides the target DNA toward catalysis in CRISPR-Cas12a

Biophysical origin of adenine base editors’ improved editing efficiency

Folding and unfolding of an alpha-helical lid govern target double-stranded DNA break in Cas12a

Key role of an alpha-helical lid in driving the target DNA toward catalysis in CRISPR-Cas12a

GPU-enhanced DFTB metadynamics for efficiently predicting free energies of biochemical systems

Harnessing GPU-Enhanced Simulations for Efficient DFTB Metadynamics of Biochemical Systems

The synchronized catalytic dance of CRISPR-Cas9

Structure and dynamics of off-target effects in CRISPR-Cas9

Aakash Saha Information

University

University of California, Riverside

Position

___

Citations(all)

278

Citations(since 2020)

278

Cited By

16

hIndex(all)

7

hIndex(since 2020)

7

i10Index(all)

7

i10Index(since 2020)

7

Email

University Profile Page

University of California, Riverside

Aakash Saha Skills & Research Interests

Biophysics

Computational Biology

Computational Chemistry

CRISPR-Cas

Top articles of Aakash Saha

Title

Journal

Author(s)

Publication Date

An alpha-helical lid guides the target DNA toward catalysis in CRISPR-Cas12a

Nature Communications

Aakash Saha

Mohd Ahsan

Pablo R Arantes

Michael Schmitz

Christelle Chanez

...

2024/2/17

Biophysical origin of adenine base editors’ improved editing efficiency

Biophysical Journal

Pablo R Arantes

Souvik Sinha

Xiaoyu Chen

Aakash Saha

Amun C Patel

...

2024/2/8

Folding and unfolding of an alpha-helical lid govern target double-stranded DNA break in Cas12a

Biophysical Journal

Aakash Saha

Isabel Strohkendl

Mohd Ahsan

Catherine Moy

Alexander-Hoi Nguyen

...

2024/2/8

Key role of an alpha-helical lid in driving the target DNA toward catalysis in CRISPR-Cas12a

Biophysical Journal

Aakash Saha

Mohd Ahsan

Pablo R Arantes

Christelle Chanez

Michael Schmitz

...

2023/2/10

GPU-enhanced DFTB metadynamics for efficiently predicting free energies of biochemical systems

Molecules

Anshuman Kumar

Pablo R Arantes

Aakash Saha

Giulia Palermo

Bryan M Wong

2023/1/28

Harnessing GPU-Enhanced Simulations for Efficient DFTB Metadynamics of Biochemical Systems

APS March Meeting Abstracts

Anshuman Kumar

Pablo Arantes

Aakash Saha

Giulia Palermo

Bryan Wong

2023

The synchronized catalytic dance of CRISPR-Cas9

Nature Catalysis

Aakash Saha

Chinmai Pindi

Giulia Palermo

2023/10

Structure and dynamics of off-target effects in CRISPR-Cas9

Biophysical Journal

Pablo R Arantes

Brandon P Mitchell

Aakash Saha

Lukasz Nierzwicki

Martin Pacesa

...

2023/2/10

Dynamics and mechanisms of CRISPR-Cas9 through the lens of computational methods

Biophysical Journal

Giulia Palermo

2024/2/8

Atomistic understanding of the RNA-mediated allosteric crosstalk in Cas13a

Biophysical Journal

Souvik Sinha

Pablo R Arantes

Aakash Saha

Giulia Palermo

2022/2/11

Multi-microsecond molecular dynamics unveils the mechanism of DNA traversal within CRISPR-Cas12a

Biophysical Journal

Aakash Saha

Pablo R Arantes

Mohd Ahsan

Martin Jinek

Giulia Palermo

2022/2/11

Structural basis for Cas9 off-target activity

Cell

Martin Pacesa

Chun-Han Lin

Antoine Cléry

Aakash Saha

Pablo R Arantes

...

2022/10/27

Enhancement of CRISPR/Cas12a trans-cleavage activity using hairpin DNA reporters

Nucleic acids research

Marianna Rossetti

Rosa Merlo

Neda Bagheri

Danila Moscone

Anna Valenti

...

2022/8/12

Establishing the allosteric mechanism in CRISPR‐Cas9

WIREs Computational Molecular Science

Łukasz Nierzwicki

Pablo R. Arantes

Aakash Saha

Giulia Palermo

2020/10/26

Cooperative Dynamics of REC-Nuc Lobes Prime Cas12a for DNA Processing

Biophysical Journal

Aakash Saha

Pablo R Arantes

Rohaine Hsu

Yogesh B Narkhede

Martin Jinek

...

2021/2/12

DNA-Induced Allosteric Control Regulates Activation of Cas12A

Biophysical Journal

Pablo R Arantes

Aakash Saha

Martin Jinek

Giulia Palermo

2021/2/12

Frontiers of metal-coordinating drug design

Giulia Palermo

Angelo Spinello

Aakash Saha

Alessandra Magistrato

2021/5/4

Cover Image, Volume 11, Issue 3.

WIREs: Computational Molecular Science

Łukasz Nierzwicki

Pablo Ricardo Arantes

Aakash Saha

Giulia Palermo

2021/5/1

Molecular dynamics reveals a DNA-induced dynamic switch triggering activation of CRISPR-Cas12a

Journal of chemical information and modeling

Aakash Saha

Pablo R Arantes

Rohaine V Hsu

Yogesh B Narkhede

Martin Jinek

...

2020/10/27

Fighting COVID-19 using molecular dynamics simulations

ACS Central Science

Pablo R Arantes

Aakash Saha

Giulia Palermo

2020/10/12

See List of Professors in Aakash Saha University(University of California, Riverside)

Aakash Saha FAQs

What is Aakash Saha's h-index at University of California, Riverside?

The h-index of Aakash Saha has been 7 since 2020 and 7 in total.

What are Aakash Saha's top articles?

The articles with the titles of

An alpha-helical lid guides the target DNA toward catalysis in CRISPR-Cas12a

Biophysical origin of adenine base editors’ improved editing efficiency

Folding and unfolding of an alpha-helical lid govern target double-stranded DNA break in Cas12a

Key role of an alpha-helical lid in driving the target DNA toward catalysis in CRISPR-Cas12a

GPU-enhanced DFTB metadynamics for efficiently predicting free energies of biochemical systems

Harnessing GPU-Enhanced Simulations for Efficient DFTB Metadynamics of Biochemical Systems

The synchronized catalytic dance of CRISPR-Cas9

Structure and dynamics of off-target effects in CRISPR-Cas9

...

are the top articles of Aakash Saha at University of California, Riverside.

What are Aakash Saha's research interests?

The research interests of Aakash Saha are: Biophysics, Computational Biology, Computational Chemistry, CRISPR-Cas

What is Aakash Saha's total number of citations?

Aakash Saha has 278 citations in total.

What are the co-authors of Aakash Saha?

The co-authors of Aakash Saha are John van der Oost, Martin JINEK, Giulia Palermo, Alessandro Porchetta, Pablo Ricardo Arantes, Marianna Rossetti.

Co-Authors

H-index: 98
John van der Oost

John van der Oost

Wageningen Universiteit

H-index: 56
Martin JINEK

Martin JINEK

Universität Zürich

H-index: 34
Giulia Palermo

Giulia Palermo

University of California, Riverside

H-index: 26
Alessandro Porchetta

Alessandro Porchetta

Università degli Studi di Roma Tor Vergata

H-index: 13
Pablo Ricardo Arantes

Pablo Ricardo Arantes

University of California, Riverside

H-index: 10
Marianna Rossetti

Marianna Rossetti

Università degli Studi di Roma Tor Vergata

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