Zuobai Zhang at Fudan University

University	Fudan University
Position	___
Citations(all)	547
Citations(since 2020)	547
Cited By	2
hIndex(all)	10
hIndex(since 2020)	10
i10Index(all)	10
i10Index(since 2020)	10
Email	Access Email
University Profile Page	Fudan University
Google Scholar	View Google Scholar Profile

Fusing Neural and Physical: Augment Protein Conformation Sampling with Tractable Simulations

arXiv preprint arXiv:2402.10433

2024/2/16

Zuobai Zhang

H-Index: 1

Bozitao Zhong

H-Index: 1

Jian Tang

H-Index: 2

ProtIR: Iterative Refinement between Retrievers and Predictors for Protein Function Annotation

arXiv preprint arXiv:2402.07955

2024/2/10

Zuobai Zhang

H-Index: 1

Payel Das

H-Index: 20

Jian Tang

H-Index: 2

Structure-Informed Protein Language Model

arXiv preprint arXiv:2402.05856

2024/2/7

Zuobai Zhang

H-Index: 1

Payel Das

H-Index: 20

Jian Tang

H-Index: 2

PDB-Struct: A Comprehensive Benchmark for Structure-based Protein Design

NeurIPS 2023 Workshop on New Frontiers of AI for Drug Discovery and Development

2023/11/30

Bozitao Zhong

H-Index: 1

Zuobai Zhang

H-Index: 1

Jian Tang

H-Index: 2

Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling

ICLR 2024

2023/6/5

Bozitao Zhong

H-Index: 1

Zuobai Zhang

H-Index: 1

Jian Tang

H-Index: 2

DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing

2023/6/1

Bozitao Zhong

H-Index: 1

Jian Tang

H-Index: 2

Pre-Training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction

Advances in Neural Information Processing Systems

2024/2/13

Zuobai Zhang

H-Index: 1

Minghao Xu

H-Index: 12

Payel Das

H-Index: 20

Jian Tang

H-Index: 2

Evaluating Representation Learning on the Protein Structure Universe

2024/4

Charles Harris

H-Index: 1

Jian Tang

H-Index: 2

Jianlin Cheng

H-Index: 40

Tom L Blundell

H-Index: 57

Bering: joint cell segmentation and annotation for spatial transcriptomics with transferred graph embeddings

bioRxiv

2023/9/22

Kang Jin

H-Index: 2

Zuobai Zhang

H-Index: 1

Ke Zhang

H-Index: 45

Jian Tang

H-Index: 2

Jian Shu

H-Index: 9

Pretrainable Geometric Graph Neural Network for Antibody Affinity Maturation

bioRxiv

2023

Yanling Wu

H-Index: 2

Jian Tang

H-Index: 2

FusionRetro: Molecule Representation Fusion via In-context Reactions for Retrosynthetic Planning

Proceedings of the 40th International Conference on Machine Learning (ICML)

2023/7/23

Zhengkai Tu

H-Index: 1

Zuobai Zhang

H-Index: 1

Lu Lin

H-Index: 17

Jian Tang

H-Index: 2

Dinghao Wu

H-Index: 28

Effects of Stubbornness on Opinion Dynamics

2022/10/17

Wanyue Xu

H-Index: 1

Zuobai Zhang

H-Index: 1

Neural-Symbolic Models for Logical Queries on Knowledge Graphs

2022/6/28

Zuobai Zhang

H-Index: 1

Jian Tang

H-Index: 2

Structured multi-task learning for molecular property prediction

AISTATS 2022

2022/2/22

Meng Qu

H-Index: 4

Zuobai Zhang

H-Index: 1

Jian Tang

H-Index: 2

A roadmap for big model

arXiv preprint arXiv:2203.14101

2022/3/26

Shuai Zhao

H-Index: 8

Xiaozhi Wang

H-Index: 5

Jifan Yu

H-Index: 2

Xin Lv

H-Index: 3

Zhou Shao

H-Index: 5

Jiaao He

H-Index: 2

Xu Han

H-Index: 12

Zhenghao Liu

H-Index: 8

Ning Ding

H-Index: 7

Yongming Rao

H-Index: 11

Yizhao Gao

H-Index: 7

Liang Zhang

H-Index: 3

Ming Ding

H-Index: 9

Yisen Wang

H-Index: 17

Mingsheng Long

H-Index: 41

Jing Zhang

H-Index: 7

Yinpeng Dong

H-Index: 18

Tianyu Pang

H-Index: 12

Peng Cui

H-Index: 4

Zheng Liang

H-Index: 2

Hui Zhang

H-Index: 16

Shuo Wang

H-Index: 31

Long Zhou

H-Index: 4

Haoran Li

H-Index: 32

Weinan Zhang

H-Index: 35

Zhou Yu

H-Index: 20

Rui Yan

H-Index: 7

Minghao Xu

H-Index: 12

Zuobai Zhang

H-Index: 1

Guoqiang Wang

H-Index: 6

Xiang Pan

H-Index: 7

Mengjie Li

H-Index: 6

Shulin Cao

H-Index: 1

Weicheng Xue

H-Index: 2

Zhengyan Zhang

H-Index: 5

Shengding Hu

H-Index: 2

Yujia Qin

H-Index: 3

Chaojun Xiao

H-Index: 6

Ganqu Cui

H-Index: 5

Weize Chen

H-Index: 1

Yuan Yao

H-Index: 9

Peng Li

H-Index: 6

Wenzhao Zheng

H-Index: 2

Ziyi Wang

H-Index: 3

Borui Zhang

H-Index: 2

Zenan Ling

H-Index: 9

Haoyang Li

H-Index: 1

Baobao Chang

H-Index: 20

Hao Sun

H-Index: 7

Jiawen Deng

H-Index: 3

Chujie Zheng

H-Index: 2

Juanzi Li

H-Index: 33

Lei Hou

H-Index: 9

Jidong Zhai

H-Index: 14

Zhiyuan Liu

H-Index: 1

Maosong Sun

H-Index: 51

Zhiwu Lu

H-Index: 17

Ruihua Song

H-Index: 19

Ji-Rong Wen

H-Index: 39

Zhouchen Lin

H-Index: 51

Liwei Wang

H-Index: 32

Hang Su

H-Index: 3

Jun Zhu

H-Index: 2

Jiajun Zhang

H-Index: 1

Yang Liu

H-Index: 18

Minlie Huang

H-Index: 51

Jian Tang

H-Index: 2

Jie Tang

H-Index: 5

Protein representation learning by geometric structure pretraining

arXiv preprint arXiv:2203.06125

2022/3/11

Zuobai Zhang

H-Index: 1

Minghao Xu

H-Index: 12

Arian Jamasb

H-Index: 4

Payel Das

H-Index: 20

Jian Tang

H-Index: 2

Torchdrug: A powerful and flexible machine learning platform for drug discovery

arXiv preprint arXiv:2202.08320

2022/2/16

Zuobai Zhang

H-Index: 1

Minghao Xu

H-Index: 12

Junkun Chen

H-Index: 4

Chang Ma

H-Index: 6

Meng Qu

H-Index: 4

Jian Tang

H-Index: 2

PEER: A Comprehensive and Multi-Task Benchmark for Protein Sequence Understanding.

Advances in Neural Information Processing Systems

2022/12/6

Minghao Xu

H-Index: 12

Zuobai Zhang

H-Index: 1

Jian Tang

H-Index: 2

Neural bellman-ford networks: A general graph neural network framework for link prediction

Advances in Neural Information Processing Systems

2021/12/6

Zuobai Zhang

H-Index: 1

Jian Tang

H-Index: 2

Biharmonic distance-based performance metric for second-order noisy consensus networks

IEEE Transactions on Information Theory

2021/11/12

Yuhao Yi

H-Index: 9

Zuobai Zhang

H-Index: 1

Stacy Patterson

H-Index: 15

Zuobai Zhang

Fudan University

About Zuobai Zhang

Zuobai Zhang Information

Zuobai Zhang Skills & Research Interests

Top articles of Zuobai Zhang

Fusing Neural and Physical: Augment Protein Conformation Sampling with Tractable Simulations

Zuobai Zhang

Bozitao Zhong

Jian Tang

ProtIR: Iterative Refinement between Retrievers and Predictors for Protein Function Annotation

Zuobai Zhang

Payel Das

Jian Tang

Structure-Informed Protein Language Model

Zuobai Zhang

Payel Das

Jian Tang

PDB-Struct: A Comprehensive Benchmark for Structure-based Protein Design

Bozitao Zhong

Zuobai Zhang

Jian Tang

Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling

Bozitao Zhong

Zuobai Zhang

Jian Tang

DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing

Bozitao Zhong

Jian Tang

Pre-Training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction

Zuobai Zhang

Minghao Xu

Payel Das

Jian Tang

Evaluating Representation Learning on the Protein Structure Universe

Charles Harris

Jian Tang

Jianlin Cheng

Tom L Blundell

Bering: joint cell segmentation and annotation for spatial transcriptomics with transferred graph embeddings

Kang Jin

Zuobai Zhang

Ke Zhang

Jian Tang

Jian Shu

Pretrainable Geometric Graph Neural Network for Antibody Affinity Maturation

Yanling Wu

Jian Tang

FusionRetro: Molecule Representation Fusion via In-context Reactions for Retrosynthetic Planning

Zhengkai Tu

Zuobai Zhang

Lu Lin

Jian Tang

Dinghao Wu

Effects of Stubbornness on Opinion Dynamics

Wanyue Xu

Zuobai Zhang

Neural-Symbolic Models for Logical Queries on Knowledge Graphs

Zuobai Zhang

Jian Tang

Structured multi-task learning for molecular property prediction

Meng Qu

Zuobai Zhang

Jian Tang

A roadmap for big model

Shuai Zhao

Xiaozhi Wang

Jifan Yu

Xin Lv

Zhou Shao

Jiaao He

Xu Han

Zhenghao Liu

Ning Ding

Yongming Rao

Yizhao Gao

Liang Zhang

Ming Ding

Yisen Wang

Mingsheng Long