Joanna Sułkowska
Uniwersytet Warszawski
H-index: 37
Europe-Poland
Top articles of Joanna Sułkowska
Title | Journal | Author(s) | Publication Date |
|---|---|---|---|
Knots and θ-Curves Identification in Polymeric Chains and Native Proteins Using Neural Networks | Macromolecules | Fernando Bruno da Silva Boštjan Gabrovšek Marta Korpacz Kamil Luczkiewicz Szymon Niewieczerzal | 2024/4/15 |
Discovery of a trefoil knot in the RydC RNA: Challenging previous notions of RNA topology | Journal of Molecular Biology | Wanda Niemyska Sunandan Mukherjee Bartosz A Gren Szymon Niewieczerzal Janusz M Bujnicki | 2024/3/15 |
Knotted artifacts in predicted 3D RNA structures | bioRxiv | Bartosz A Gren Maciej Antczak Tomasz Zok Joanna I Sulkowska Marta Szachniuk | 2024/3/6 |
Knot or Not? Sequence-Based Identification of Knotted Proteins With Machine Learning | bioRxiv | Denisa Sramkova Maciej Sikora Dawid Uchal Eva Klimentova Agata P Perlinska | 2023 |
Conservation of knotted and slipknotted topology in transmembrane transporters | Biophysical Journal | Vasilina Zayats Maciej Sikora Agata P Perlinska Adam Stasiulewicz Bartosz A Gren | 2023/12/5 |
Proteins containing 6-crossing knot types and their folding pathways | bioRxiv | Maciej Sikora Erica Flapan Helen Wong Pawel Rubach Wojciech Garstka | 2023 |
AlphaFold predicts novel human proteins with knots | Protein Science | Agata P Perlinska Wanda H Niemyska Bartosz A Gren Marek Bukowicki Szymon Nowakowski | 2023/5 |
Nucleolar Essential Protein 1 (Nep1): Elucidation of Enzymatic Catalysis Mechanism by Combined Molecular Dynamics Simulation and Quantum Chemical Calculations | Computational and Structural Biotechnology Journal | Mateusz Jedrzejewski Barbara Belza Iwona Lewandowska Marta Sadlej Agata P Perlinska | 2023/1/1 |
First crystal structure of double knotted protein TrmD-Tm1570–inside from degradation perspective | bioRxiv | Fernando Bruno da Silva Iwona Lewandowska Anna Kluza Szymon Niewieczerzal Rafał Augustyniak | 2023/3/14 |
Identification of Novel CB2 Ligands through Virtual Screening and In Vitro Evaluation | Journal of Chemical Information and Modeling | Adam Stasiulewicz Anna Lesniak Magdalena Bujalska-Zadrozny Tomasz Pawinski Joanna I Sulkowska | 2023/1/24 |
PDBe-KB: collaboratively defining the biological context of structural data | Nucleic acids research | 2022/1/7 | |
New 63 knot and other knots in human proteome from AlphaFold predictions | bioRxiv | Agata P Perlinska Wanda H Niemyska Bartosz A Gren Pawel Rubach Joanna I Sulkowska | 2022/1/1 |
Amino acid variants of SARS-CoV-2 papain-like protease have impact on drug binding | PLOS Computational Biology | Agata P Perlinska Adam Stasiulewicz Mai Lan Nguyen Karolina Swiderska Mikolaj Zmudzinski | 2022/11/21 |
Identification of CB1 ligands among drugs, phytochemicals and natural-like compounds: virtual screening and in vitro verification | ACS Chemical Neuroscience | Adam Stasiulewicz Anna Lesniak Piotr Setny Magdalena Bujalska-Zadrożny Joanna I Sulkowska | 2022/10/5 |
AlphaKnot: server to analyze entanglement in structures predicted by AlphaFold methods | Nucleic Acids Research | Wanda Niemyska Pawel Rubach Bartosz A Gren Mai Lan Nguyen Wojciech Garstka | 2022/7/5 |
Lasso Proteins—Unifying Cysteine Knots and Miniproteins | Polymers | Bartosz Ambroży Greń Pawel Dabrowski-Tumanski Wanda Niemyska Joanna Ida Sulkowska | 2021/11/18 |
Slipknotted and unknotted monovalent cation-proton antiporters evolved from a common ancestor | PLoS computational biology | Vasilina Zayats Agata P Perlinska Aleksandra I Jarmolinska Borys Jastrzebski Stanislaw Dunin-Horkawicz | 2021/10/14 |
Topoly: Python package to analyze topology of polymers | Briefings in Bioinformatics | Pawel Dabrowski-Tumanski Pawel Rubach Wanda Niemyska Bartosz Ambrozy Gren Joanna Ida Sulkowska | 2021/5 |
Knot_pull—python package for biopolymer smoothing and knot detection | Bioinformatics | Aleksandra I Jarmolinska Anna Gambin Joanna I Sulkowska | 2020/2/1 |
The folding of knotted proteins: distinguishing the distinct behavior of shallow and deep knots | Maciej Piejko Szymon Niewieczerzal Joanna I Sulkowska | 2020/7 |
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