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Tal Ashuach

Tal Ashuach

University of California, Berkeley

H-index: 10

North America-United States

Contact Tal Ashuach

About Tal Ashuach

Tal Ashuach, With an exceptional h-index of 10 and a recent h-index of 10 (since 2020), a distinguished researcher at University of California, Berkeley, specializes in the field of Computational Biology, Functional Genomics, Bioinformatics, Machine Learning.

His recent articles reflect a diverse array of research interests and contributions to the field:

Optimizing sequence design strategies for perturbation MPRAs: a computational evaluation framework

Hepatitis C virus infects and perturbs liver stem cells

Best practices for perturbation MPRA–a computational evaluation framework of sequence design strategies

MultiVI: deep generative model for the integration of multimodal data

A Python library for probabilistic analysis of single-cell omics data

Methodology and Applications for studying the Heterogeneity and Sequence Determinants of cis-Regulatory Elements

NF-κB inhibitor alpha has a cross-variant role during SARS-CoV-2 infection in ACE2-overexpressing human airway organoids

PeakVI: A deep generative model for single-cell chromatin accessibility analysis

Tal Ashuach Information

University

Position

___

Citations(all)

868

Citations(since 2020)

867

Cited By

104

hIndex(all)

10

hIndex(since 2020)

10

i10Index(all)

10

i10Index(since 2020)

10

Email

University Profile Page

Google Scholar

Tal Ashuach Skills & Research Interests

Computational Biology

Functional Genomics

Bioinformatics

Machine Learning

Top articles of Tal Ashuach

Optimizing sequence design strategies for perturbation MPRAs: a computational evaluation framework

Nucleic Acids Research

2024/2/28

Jiayi Liu
Jiayi Liu

H-Index: 1

Tal Ashuach
Tal Ashuach

H-Index: 5

Fumitaka Inoue
Fumitaka Inoue

H-Index: 10

Nadav Ahituv
Nadav Ahituv

H-Index: 35

Anat Kreimer
Anat Kreimer

H-Index: 11

Hepatitis C virus infects and perturbs liver stem cells

Mbio

2023/12/19

Tal Ashuach
Tal Ashuach

H-Index: 5

Mehdi Bouhaddou
Mehdi Bouhaddou

H-Index: 13

Vaishaali Natarajan
Vaishaali Natarajan

H-Index: 5

Best practices for perturbation MPRA–a computational evaluation framework of sequence design strategies

bioRxiv

2023/9/29

Jiayi Liu
Jiayi Liu

H-Index: 1

Tal Ashuach
Tal Ashuach

H-Index: 5

Fumitaka Inoue
Fumitaka Inoue

H-Index: 10

Nadav Ahituv
Nadav Ahituv

H-Index: 35

Anat Kreimer
Anat Kreimer

H-Index: 11

MultiVI: deep generative model for the integration of multimodal data

Nature Methods

2023/8

Tal Ashuach
Tal Ashuach

H-Index: 5

Giuseppe-Antonio Saldi
Giuseppe-Antonio Saldi

H-Index: 4

A Python library for probabilistic analysis of single-cell omics data

Nature biotechnology

2022/2

Adam Gayoso
Adam Gayoso

H-Index: 5

Romain Lopez
Romain Lopez

H-Index: 7

Galen Xing
Galen Xing

H-Index: 2

Pierre Boyeau
Pierre Boyeau

H-Index: 2

Justin Hong
Justin Hong

H-Index: 1

Michael Jayasuriya
Michael Jayasuriya

H-Index: 0

Yining Liu
Yining Liu

H-Index: 14

Tal Ashuach
Tal Ashuach

H-Index: 5

Eduardo Da Veiga Beltrame
Eduardo Da Veiga Beltrame

H-Index: 6

Lior Pachter
Lior Pachter

H-Index: 48

Aaron Streets
Aaron Streets

H-Index: 14

Jeffrey Regier
Jeffrey Regier

H-Index: 11

Methodology and Applications for studying the Heterogeneity and Sequence Determinants of cis-Regulatory Elements

2022

Tal Ashuach
Tal Ashuach

H-Index: 5

NF-κB inhibitor alpha has a cross-variant role during SARS-CoV-2 infection in ACE2-overexpressing human airway organoids

BioRxiv

2022/8/2

Tal Ashuach
Tal Ashuach

H-Index: 5

Sreelakshmi Vasudevan
Sreelakshmi Vasudevan

H-Index: 6

Xiaohui Fang
Xiaohui Fang

H-Index: 8

Mehrdad Arjomandi
Mehrdad Arjomandi

H-Index: 13

PeakVI: A deep generative model for single-cell chromatin accessibility analysis

Cell reports methods

2022/3/28

Tal Ashuach
Tal Ashuach

H-Index: 5

Adam Gayoso
Adam Gayoso

H-Index: 5

Massively parallel reporter perturbation assays uncover temporal regulatory architecture during neural differentiation

Nature communications

2022/3/21

Anat Kreimer
Anat Kreimer

H-Index: 11

Tal Ashuach
Tal Ashuach

H-Index: 5

Fumitaka Inoue
Fumitaka Inoue

H-Index: 10

Chengyu Deng
Chengyu Deng

H-Index: 2

Nadav Ahituv
Nadav Ahituv

H-Index: 35

The single-cell epigenomic and transcriptional landscape of immunity to influenza vaccination

Cell

2021/7/22

Florian Wimmers
Florian Wimmers

H-Index: 11

Michele Donato
Michele Donato

H-Index: 12

Tal Ashuach
Tal Ashuach

H-Index: 5

Chunfeng Li
Chunfeng Li

H-Index: 14

Mark Davis
Mark Davis

H-Index: 10

Nadine Rouphael
Nadine Rouphael

H-Index: 28

Shankar Subramaniam
Shankar Subramaniam

H-Index: 23

Purvesh Khatri
Purvesh Khatri

H-Index: 46

Bali Pulendran
Bali Pulendran

H-Index: 61

Author Correction: lentiMPRA and MPRAflow for high-throughput functional characterization of gene regulatory elements

Nature protocols

2021/7

Fumitaka Inoue
Fumitaka Inoue

H-Index: 10

Vikram Agarwal
Vikram Agarwal

H-Index: 16

Sean Whalen
Sean Whalen

H-Index: 14

Jingjing Zhao
Jingjing Zhao

H-Index: 5

Tal Ashuach
Tal Ashuach

H-Index: 5

Anat Kreimer
Anat Kreimer

H-Index: 11

Ilias Georgakopoulos-Soares
Ilias Georgakopoulos-Soares

H-Index: 6

Chun Jimmie Ye
Chun Jimmie Ye

H-Index: 28

Katherine S Pollard
Katherine S Pollard

H-Index: 54

Jay Shendure
Jay Shendure

H-Index: 113

Nadav Ahituv
Nadav Ahituv

H-Index: 35

Single-cell analysis of the epigenomic and transcriptional landscape of innate immunity to seasonal and adjuvanted pandemic influenza vaccination in humans

MedRxiv

2021/5/26

Florian Wimmers
Florian Wimmers

H-Index: 11

Michele Donato
Michele Donato

H-Index: 12

Tal Ashuach
Tal Ashuach

H-Index: 5

Chunfeng Li
Chunfeng Li

H-Index: 14

Mark Davis
Mark Davis

H-Index: 10

Nadine Rouphael
Nadine Rouphael

H-Index: 28

Shankar Subramaniam
Shankar Subramaniam

H-Index: 23

Purvesh Khatri
Purvesh Khatri

H-Index: 46

Bali Pulendran
Bali Pulendran

H-Index: 61

Overexpression of ACE2 renders airway organoids permissive to SARS-CoV-2

Stem cell derived organoids and RNA virus pathogenesis

2021

Tal Ashuach
Tal Ashuach

H-Index: 5

Xiaohui Fang
Xiaohui Fang

H-Index: 8

Mehrdad Arjomandi
Mehrdad Arjomandi

H-Index: 13

lentiMPRA and MPRAflow for high-throughput functional characterization of gene regulatory elements

Nature protocols

2020/8/1

Fumitaka Inoue
Fumitaka Inoue

H-Index: 10

Vikram Agarwal
Vikram Agarwal

H-Index: 16

Sean Whalen
Sean Whalen

H-Index: 14

Jingjing Zhao
Jingjing Zhao

H-Index: 5

Tal Ashuach
Tal Ashuach

H-Index: 5

Anat Kreimer
Anat Kreimer

H-Index: 11

Ilias Georgakopoulos-Soares
Ilias Georgakopoulos-Soares

H-Index: 6

Chun Jimmie Ye
Chun Jimmie Ye

H-Index: 28

Katherine S Pollard
Katherine S Pollard

H-Index: 54

Jay Shendure
Jay Shendure

H-Index: 113

Nadav Ahituv
Nadav Ahituv

H-Index: 35

See List of Professors in Tal Ashuach University(University of California, Berkeley)