Shaun Mahony
Penn State University
H-index: 34
North America-United States
Top articles of Shaun Mahony
Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes
bioRxiv
2023/11/21
Systematic Dissection of Sequence Features Affecting the Binding Specificity of a Pioneer Factor Reveals Binding Synergy Between FOXA1 and AP-1
bioRxiv
2023/11/11
SEM: sized-based expectation maximization for characterizing nucleosome positions and subtypes
bioRxiv
2023/10/20
Joint sequence & chromatin neural networks characterize the differential abilities of Forkhead transcription factors to engage inaccessible chromatin
bioRxiv
2023/10/9
Allo: Accurate allocation of multi-mapped reads enables regulatory element analysis at repeats
bioRxiv
2023/9/15
Shaun Mahony
H-Index: 21
The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles
Genome biology
2023/4/18
Jacob Schreiber
H-Index: 11
Carles Boix
H-Index: 3
Hongyang Li
H-Index: 2
Chun-Chieh Chang
H-Index: 16
Gabriele Schweikert
H-Index: 11
Arif Canakoglu
H-Index: 7
Luca Nanni
H-Index: 6
Marco Masseroli
H-Index: 17
Pietro Pinoli
H-Index: 11
Sanjit Singh Batra
H-Index: 7
Shaun Mahony
H-Index: 21
Zheng Zhang
H-Index: 1
Yang Shen
H-Index: 68
Jessika Adrian
H-Index: 12
Bradley Bernstein
H-Index: 91
Michael Snyder
H-Index: 118
Manolis Kellis
H-Index: 111
Anshul Kundaje
H-Index: 49
Dna Sequence Context and the Chromatin Landscape Differentiate Sequence-Specific Transcription Factor Binding in the Human Malaria Parasite Plasmodium Falciparum
2023
Synthetic regulatory reconstitution reveals principles of mammalian Hox cluster regulation
Science
2022/7/1
Foxa2 and Pet1 Direct and Indirect Synergy Drive Serotonergic Neuronal Differentiation
Frontiers in Neuroscience
2022/6/20
Shaun Mahony
H-Index: 21
Esteban O Mazzoni
H-Index: 25
PEGR: a flexible management platform for reproducible epigenomic and genomic research
Genome biology
2022/4/19
The BTB transcription factors ZBTB11 and ZFP131 maintain pluripotency by repressing pro-differentiation genes
Cell reports
2022/3/15
Domain-adaptive neural networks improve cross-species prediction of transcription factor binding
Genome research
2022/3/1
An interpretable bimodal neural network characterizes the sequence and preexisting chromatin predictors of induced transcription factor binding
Genome biology
2021/12
S3V2-IDEAS: a package for normalizing, denoising and integrating epigenomic datasets across different cell types
Bioinformatics
2021/9/15
The PfAP2‐G2 transcription factor is a critical regulator of gametocyte maturation
Molecular microbiology
2021/5
Shaun Mahony
H-Index: 21
Manuel Llinás
H-Index: 36
Assessing relationships between chromatin interactions and regulatory genomic activities using the self-organizing map
Methods
2021/5/1
Shaun Mahony
H-Index: 21
A high-resolution protein architecture of the budding yeast genome
Nature
2021/4/8
Alignment and quantification of ChIP-exo crosslinking patterns reveal the spatial organization of protein–DNA complexes
Nucleic acids research
2020/11/18
Shaun Mahony
H-Index: 21
Differential abilities to engage inaccessible chromatin diversify vertebrate Hox binding patterns
Development
2020/11/15
Divyanshi Srivastava
H-Index: 3
Hynek Wichterle
H-Index: 34
Shaun Mahony
H-Index: 21
Esteban O Mazzoni
H-Index: 25
PEGR: a management platform for ChIP-based next generation sequencing pipelines
2020/7/26
Shaun Mahony
H-Index: 21
Co-Authors
