Roozbeh Dehghannasiri

Roozbeh Dehghannasiri

Stanford University

H-index: 14

North America-United States

Contact Roozbeh Dehghannasiri

About Roozbeh Dehghannasiri

Roozbeh Dehghannasiri, With an exceptional h-index of 14 and a recent h-index of 13 (since 2020), a distinguished researcher at Stanford University, specializes in the field of Single-cell genomics, Computational Biology, RNA splicing, Cancer Systems Biology, Machine Learning.

His recent articles reflect a diverse array of research interests and contributions to the field:

Interstitial macrophages are a focus of viral takeover and inflammation in COVID-19 initiation in human lung

An organism-wide atlas of hormonal signaling based on the mouse lemur single-cell transcriptome

Pretraining and the Lasso

Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision

SPLASH2 provides ultra-efficient, scalable, and unsupervised discovery on raw sequencing reads

Cell types of origin of the cell-free transcriptome

Unsupervised reference-free inference reveals unrecognized regulated transcriptomic complexity in human single cells

ReadZS detects cell type-specific and developmentally regulated RNA processing programs in single-cell RNA-seq

Roozbeh Dehghannasiri Information

University	Stanford University
Position	Postdoctoral Research Fellow
Citations(all)	958
Citations(since 2020)	815
Cited By	285
hIndex(all)	14
hIndex(since 2020)	13
i10Index(all)	18
i10Index(since 2020)	14
Email	Access Email
University Profile Page	Stanford University
Google Scholar	View Google Scholar Profile

Roozbeh Dehghannasiri Skills & Research Interests

Single-cell genomics

Computational Biology

RNA splicing

Cancer Systems Biology

Machine Learning

Top articles of Roozbeh Dehghannasiri

Interstitial macrophages are a focus of viral takeover and inflammation in COVID-19 initiation in human lung

Journal of Experimental Medicine

2024/4/10

Timothy Ting-Hsuan Wu

H-Index: 2

Arjun Rustagi

H-Index: 13

Duo Xu

H-Index: 2

Yue Zhang

H-Index: 3

Astrid Gillich

H-Index: 16

Roozbeh Dehghannasiri

H-Index: 9

Julia Salzman

H-Index: 18

An organism-wide atlas of hormonal signaling based on the mouse lemur single-cell transcriptome

Nature communications

2024/3/11

Shixuan Liu

H-Index: 4

Iwijn De Vlaminck

H-Index: 24

Sheng Wang

H-Index: 10

Pretraining and the Lasso

2024/1/23

Erin Craig

H-Index: 2

Mert Pilanci

H-Index: 10

Roozbeh Dehghannasiri

H-Index: 9

Julia Salzman

H-Index: 18

Jonathan Taylor

H-Index: 12

Robert Tibshirani

H-Index: 110

Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision

Nature methods

2023/8

Marieke Vromman

H-Index: 1

Stefania Bortoluzzi

H-Index: 24

Qinjie Chu

H-Index: 6

Roozbeh Dehghannasiri

H-Index: 9

Xin Dong

H-Index: 7

Enrico Gaffo

H-Index: 8

Wanjun Gu

H-Index: 0

Chunjiang He

H-Index: 22

Michael S Jackson

H-Index: 15

Julia Salzman

H-Index: 18

Peter Stadler

H-Index: 7

Olivier Thas

H-Index: 26

Kimberly Verniers

H-Index: 3

Li Yang

H-Index: 16

Jinyang Zhang

H-Index: 8

Pieter-Jan Volders

H-Index: 17

SPLASH2 provides ultra-efficient, scalable, and unsupervised discovery on raw sequencing reads

BioRxiv

2023/7/17

Marek Kokot

H-Index: 5

Roozbeh Dehghannasiri

H-Index: 9

Tavor Baharav

H-Index: 3

Julia Salzman

H-Index: 18

Sebastian Deorowicz

H-Index: 18

Cell types of origin of the cell-free transcriptome

Nature biotechnology

2022/6

Unsupervised reference-free inference reveals unrecognized regulated transcriptomic complexity in human single cells

bioRxiv

2022/12/7

Roozbeh Dehghannasiri

H-Index: 9

George Henderson

H-Index: 8

Tavor Baharav

H-Index: 3

Peter Wang

H-Index: 2

Julia Salzman

H-Index: 18

ReadZS detects cell type-specific and developmentally regulated RNA processing programs in single-cell RNA-seq

Genome Biology

2022/10/25

Roozbeh Dehghannasiri

H-Index: 9

Julia Salzman

H-Index: 18

TGS1 impacts snRNA 3′-end processing, ameliorates survival motor neuron-dependent neurological phenotypes in vivo and prevents neurodegeneration

Nucleic Acids Research

2022/11/28

Lu Chen

H-Index: 8

Roozbeh Dehghannasiri

H-Index: 9

Alessandro Esposito

H-Index: 19

Yunming Wu

H-Index: 3

Cristiano De Pittà

H-Index: 18

Gabriele Sales

H-Index: 19

Julia Salzman

H-Index: 18

Livio Pellizzoni

H-Index: 26

Brunhilde Wirth

H-Index: 39

Maurizio Gatti

H-Index: 24

Mouse lemur transcriptomic atlas elucidates primate genes, physiology, disease, and evolution

bioRxiv

2022/8/7

Shixuan Liu

H-Index: 4

Roozbeh Dehghannasiri

H-Index: 9

Julia Olivieri

H-Index: 5

Hannah K Frank

H-Index: 8

Jane Antony

H-Index: 7

Stephen Chang

H-Index: 4

Can Yang

H-Index: 3

Bo Wang

H-Index: 9

Julia Salzman

H-Index: 18

Iwijn De Vlaminck

H-Index: 24

Angela Wu

H-Index: 2

The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans

Science

2022/5/13

Julia Salzman

H-Index: 18

William Harper

H-Index: 11

Ravikumar Ponnusamy

H-Index: 16

Ahmad Salehi

H-Index: 2

Jane Antony

H-Index: 7

Charles Kf Chan

H-Index: 23

Stephen Chang

H-Index: 4

Rebecca N Culver

H-Index: 4

Ivana Cvijović

H-Index: 5

Astrid Gillich

H-Index: 16

Bernhard Kiss

H-Index: 18

Rebecca Leylek

H-Index: 5

Wan-Jin Lu

H-Index: 11

Sruthi Mantri

H-Index: 3

Patrick L Mcalpine

H-Index: 1

Antoine De Morree

H-Index: 14

Karim Mrouj

H-Index: 3

Patrick Neuhöfer

H-Index: 6

Zhen Qi

H-Index: 7

Nicholas Schaum

H-Index: 9

Bronwyn Scott

H-Index: 3

Joe Segal

H-Index: 7

Shaheen Sikandar

H-Index: 11

Aditi Swarup

H-Index: 8

Michael Swift

H-Index: 38

Will Van Treuren

H-Index: 28

Emily Trimm

H-Index: 3

Wanxin Wang

H-Index: 4

Juliane Winkler

H-Index: 7

Yue Zhang

H-Index: 3

Jia Yan

H-Index: 11

Vivek Charu

H-Index: 21

Michelle Chen

H-Index: 4

Roozbeh Dehghannasiri

H-Index: 9

Adam Gayoso

H-Index: 5

Antoine De Morree

H-Index: 14

Julia Salzman

H-Index: 18

Michael Swift

H-Index: 38

Peter Wang

H-Index: 2

Sheng Wang

H-Index: 10

Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets

Nature Computational Science

2022/5

Jia Zhao

H-Index: 8

Yang Wang

H-Index: 11

Can Yang

H-Index: 3

The SpliZ generalizes ‘Percent Spliced In’to reveal regulated splicing at single-cell resolution

Nature methods

2022/3

Julia Salzman

H-Index: 18

Tabula Microcebus: A transcriptomic cell atlas of mouse lemur, an emerging primate model organism

BioRxiv

2021/12/12

Shixuan Liu

H-Index: 4

Stephen Chang

H-Index: 4

Antoine De Morree

H-Index: 14

Rahul Sinha

H-Index: 4

Yue Zhang

H-Index: 3

Bo Wang

H-Index: 9

Iwijn De Vlaminck

H-Index: 24

Can Yang

H-Index: 3

Angela Wu

H-Index: 2

Specific splice junction detection in single cells with SICILIAN

Genome Biology

2021/12

Roozbeh Dehghannasiri

H-Index: 9

Julia Salzman

H-Index: 18

RNA splicing programs define tissue compartments and cell types at single-cell resolution

Elife

2021/9/13

Roozbeh Dehghannasiri

H-Index: 9

Antoine De Morree

H-Index: 14

Julia Salzman

H-Index: 18

SICILIAN: Precise and unbiased detection of gene fusions at the resolution of single cells using improved statistical modeling

Cancer Research

2020/8/15

Roozbeh Dehghannasiri

H-Index: 9

Julia Salzman

H-Index: 18

See List of Professors in Roozbeh Dehghannasiri University(Stanford University)

Co-Authors

H-index: 36

Shahram Shirani — Shahram Shirani
McMaster University

Visit Shahram Shirani Page

H-index: 25

Mohammad Shahrokh Esfahani — Mohammad Shahrokh Esfahani
Stanford University

Visit Mohammad Shahrokh Esfahani Page

H-index: 24

Julia Salzman — Julia Salzman
Stanford University

Visit Julia Salzman Page

H-index: 12

Lu Chen — Lu Chen
Stanford University

Visit Lu Chen Page

H-index: 9

Julia Olivieri — Julia Olivieri
Stanford University

Visit Julia Olivieri Page

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