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Rob Patro

Rob Patro

University of Maryland

H-index: 31

North America-United States

Contact Rob Patro

About Rob Patro

Rob Patro, With an exceptional h-index of 31 and a recent h-index of 27 (since 2020), a distinguished researcher at University of Maryland, specializes in the field of computational biology, bioinformatics, algorithms, cs theory, parallel computing.

His recent articles reflect a diverse array of research interests and contributions to the field:

Fulgor: A fast and compact k-mer index for large-scale matching and color queries

Designing efficient randstrobes for sequence similarity analyses

Oarfish: Enhanced probabilistic modeling leads to improved accuracy in long read transcriptome quantification

Forseti: A mechanistic and predictive model of the splicing status of scRNA-seq reads

scCensus: Off-target scRNA-seq reads reveal meaningful biology

Fast, parallel, and cache-friendly suffix array construction

SEESAW: detecting isoform-level allelic imbalance accounting for inferential uncertainty

TreeTerminus—creating transcript trees using inferential replicate counts

Rob Patro Information

University

Position

Associate Professor Department of Computer Science

Citations(all)

12988

Citations(since 2020)

11081

Cited By

5868

hIndex(all)

31

hIndex(since 2020)

27

i10Index(all)

55

i10Index(since 2020)

45

Email

University Profile Page

Google Scholar

Rob Patro Skills & Research Interests

computational biology

bioinformatics

algorithms

cs theory

parallel computing

Top articles of Rob Patro

Fulgor: A fast and compact k-mer index for large-scale matching and color queries

Algorithms for Molecular Biology

2024/12

Jason Fan
Jason Fan

H-Index: 2

Jamshed Khan
Jamshed Khan

H-Index: 0

Noor Pratap Singh
Noor Pratap Singh

H-Index: 2

Rob Patro
Rob Patro

H-Index: 22

Designing efficient randstrobes for sequence similarity analyses

Bioinformatics

2024/4/5

Moein Karami
Moein Karami

H-Index: 1

Barış Ekim
Barış Ekim

H-Index: 3

Wei Shen
Wei Shen

H-Index: 32

Mengyang Xu
Mengyang Xu

H-Index: 6

Rob Patro
Rob Patro

H-Index: 22

Kristoffer Sahlin
Kristoffer Sahlin

H-Index: 8

Oarfish: Enhanced probabilistic modeling leads to improved accuracy in long read transcriptome quantification

bioRxiv

2024

Rob Patro
Rob Patro

H-Index: 22

Forseti: A mechanistic and predictive model of the splicing status of scRNA-seq reads

bioRxiv

2024

Yuan Gao
Yuan Gao

H-Index: 4

Rob Patro
Rob Patro

H-Index: 22

scCensus: Off-target scRNA-seq reads reveal meaningful biology

bioRxiv

2024

Rob Patro
Rob Patro

H-Index: 22

Fast, parallel, and cache-friendly suffix array construction

2023

Jamshed Khan
Jamshed Khan

H-Index: 0

Tobias Rubel
Tobias Rubel

H-Index: 1

Laxman Dhulipala
Laxman Dhulipala

H-Index: 12

Rob Patro
Rob Patro

H-Index: 22

SEESAW: detecting isoform-level allelic imbalance accounting for inferential uncertainty

Genome biology

2023/7/12

Mohsen Zakeri
Mohsen Zakeri

H-Index: 4

Rob Patro
Rob Patro

H-Index: 22

TreeTerminus—creating transcript trees using inferential replicate counts

Iscience

2023/6/16

Noor Pratap Singh
Noor Pratap Singh

H-Index: 2

Rob Patro
Rob Patro

H-Index: 22

Novel expression biomarkers via prediction of response to FOLFIRINOX (FFX) treatment for PDAC

Cancer Research

2023/4/4

Hossein Asghari
Hossein Asghari

H-Index: 16

Ehsan Haghshenas
Ehsan Haghshenas

H-Index: 6

Eric Schultz
Eric Schultz

H-Index: 23

Rob Patro
Rob Patro

H-Index: 22

Spectrum preserving tilings enable sparse and modular reference indexing

2023/4/3

Jason Fan
Jason Fan

H-Index: 2

Jamshed Khan
Jamshed Khan

H-Index: 0

Rob Patro
Rob Patro

H-Index: 22

Understanding and evaluating ambiguity in single-cell and single-nucleus RNA-sequencing

bioRxiv

2023/1/4

Rob Patro
Rob Patro

H-Index: 22

Tree-based differential testing using inferential uncertainty for RNA-Seq

bioRxiv

2023

Noor Pratap Singh
Noor Pratap Singh

H-Index: 2

Jason Fan
Jason Fan

H-Index: 2

Rob Patro
Rob Patro

H-Index: 22

simpleaf: a simple, flexible, and scalable framework for single-cell data processing using alevin-fry

Bioinformatics

2023/10/1

Rob Patro
Rob Patro

H-Index: 22

DifferentialRegulation: a Bayesian hierarchical approach to identify differentially regulated genes

bioRxiv

2023/8/17

Simone Tiberi
Simone Tiberi

H-Index: 4

Hirak Sarkar
Hirak Sarkar

H-Index: 6

Rob Patro
Rob Patro

H-Index: 22

Best practices for single-cell analysis across modalities

2023/8

Fabiola Curion
Fabiola Curion

H-Index: 2

Meta-colored compacted de Bruijn graphs

2023/7/25

Jason Fan
Jason Fan

H-Index: 2

Rob Patro
Rob Patro

H-Index: 22

Meta-colored compacted de Bruijn graphs: overview and challenges

2023/7/25

Jason Fan
Jason Fan

H-Index: 2

Rob Patro
Rob Patro

H-Index: 22

Scalable, ultra-fast, and low-memory construction of compacted de Bruijn graphs with Cuttlefish 2

Genome biology

2022/9/8

Jamshed Khan
Jamshed Khan

H-Index: 0

Marek Kokot
Marek Kokot

H-Index: 5

Sebastian Deorowicz
Sebastian Deorowicz

H-Index: 18

Rob Patro
Rob Patro

H-Index: 22

Detecting isoform-level allelic imbalance accounting for inferential uncertainty

bioRxiv

2022/8/13

Mohsen Zakeri
Mohsen Zakeri

H-Index: 4

Rob Patro
Rob Patro

H-Index: 22

An incrementally updatable and scalable system for large-scale sequence search using the Bentley–Saxe transformation

2022/6/15

Jamshed Khan
Jamshed Khan

H-Index: 0

Sergey Madaminov
Sergey Madaminov

H-Index: 2

Michael Ferdman
Michael Ferdman

H-Index: 19

Prashant Pandey
Prashant Pandey

H-Index: 2

Rob Patro
Rob Patro

H-Index: 22

See List of Professors in Rob Patro University(University of Maryland)

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