Pedro A Valiente

Pedro A Valiente

University of Toronto

H-index: 18

North America-Canada

About Pedro A Valiente

Pedro A Valiente, With an exceptional h-index of 18 and a recent h-index of 14 (since 2020), a distinguished researcher at University of Toronto, specializes in the field of Molecular dynamic simulations, free energy calculations, molecular docking, drug design, protein design.

His recent articles reflect a diverse array of research interests and contributions to the field:

HelixDiff, a Score-Based Diffusion Model for Generating All-Atom α-Helical Structures

Three decades targeting falcipains to develop antiplasmodial agents: what have we learned and what can be done next?

Computational Design of Potent and Selective d-Peptide Agonists of the Glucagon-like Peptide-2 Receptor

Predicting a Stable Dimeric Form of the PD1-PDL1 Complex: Implications for Understanding the PD1 Activation Mechanism

Assessment of different parameters on the accuracy of computational alanine scanning of protein–protein complexes with the molecular mechanics/generalized born surface area method

HelixGAN a deep-learning methodology for conditional de novo design of α-helix structures

Discovery of tight-binding competitive inhibitors of dipeptidyl peptidase IV

Targeting the receptor-binding motif of SARS-CoV-2 with D-peptides mimicking the ACE2 binding helix: lessons for inhibiting omicron and future variants of concern

Pedro A Valiente Information

University

Position

Donnelly Center for Cellular and Biomolecular Research Faculty of Medicine

Citations(all)

1324

Citations(since 2020)

1115

Cited By

347

hIndex(all)

18

hIndex(since 2020)

14

i10Index(all)

25

i10Index(since 2020)

17

Email

University Profile Page

Google Scholar

Pedro A Valiente Skills & Research Interests

Molecular dynamic simulations

free energy calculations

molecular docking

drug design

protein design

Top articles of Pedro A Valiente

HelixDiff, a Score-Based Diffusion Model for Generating All-Atom α-Helical Structures

ACS Central Science

2024/4/5

Pedro A Valiente
Pedro A Valiente

H-Index: 10

Three decades targeting falcipains to develop antiplasmodial agents: what have we learned and what can be done next?

Current Medicinal Chemistry

2023/9/13

Computational Design of Potent and Selective d-Peptide Agonists of the Glucagon-like Peptide-2 Receptor

Journal of Medicinal Chemistry

2023/7/25

Pedro A Valiente
Pedro A Valiente

H-Index: 10

Predicting a Stable Dimeric Form of the PD1-PDL1 Complex: Implications for Understanding the PD1 Activation Mechanism

The Journal of Physical Chemistry B

2023/6/21

Pedro A Valiente
Pedro A Valiente

H-Index: 10

Assessment of different parameters on the accuracy of computational alanine scanning of protein–protein complexes with the molecular mechanics/generalized born surface area method

The Journal of Physical Chemistry B

2023/1/20

Pedro A Valiente
Pedro A Valiente

H-Index: 10

HelixGAN a deep-learning methodology for conditional de novo design of α-helix structures

Bioinformatics

2023/1/1

Pedro A Valiente
Pedro A Valiente

H-Index: 10

Discovery of tight-binding competitive inhibitors of dipeptidyl peptidase IV

International Journal of Biological Macromolecules

2022/1/31

Targeting the receptor-binding motif of SARS-CoV-2 with D-peptides mimicking the ACE2 binding helix: lessons for inhibiting omicron and future variants of concern

Journal of Chemical Information and Modeling

2022/7/24

Pedro A Valiente
Pedro A Valiente

H-Index: 10

Unraveling a Conserved Conformation of the FG Loop upon the Binding of Natural Ligands to the Human and Murine PD1

The Journal of Physical Chemistry B

2022/2/15

Pedro A Valiente
Pedro A Valiente

H-Index: 10

Tailored Parameterization of the LIE Method for Calculating the Binding Free Energy of Vps34–Inhibitor Complexes

ACS omega

2021/10/27

Pedro A Valiente
Pedro A Valiente

H-Index: 10

Computational design of potent D-peptide inhibitors of SARS-CoV-2

Journal of Medicinal Chemistry

2021/10/8

gmx_MMPBSA: a new tool to perform end-state free energy calculations with GROMACS

Journal of chemical theory and computation

2021/9/29

Pedro A Valiente
Pedro A Valiente

H-Index: 10

Deciphering PD1 activation mechanism from molecular docking and molecular dynamic simulations

bioRxiv

2021/9/20

Pedro A Valiente
Pedro A Valiente

H-Index: 10

Differential Effects of IL2Rα and IL15Rα over the Stability of the Common Beta-Gamma Signaling Subunits of the IL2 and IL15 Receptors

Journal of Chemical Information and Modeling

2021/3/25

Pedro A Valiente
Pedro A Valiente

H-Index: 10

Exploring the conformational dynamics of PD1 in complex with different ligands: What we can learn for designing novel PD1 signaling blockers?

Proteins: Structure, Function, and Bioinformatics

2021/2

Pedro A Valiente
Pedro A Valiente

H-Index: 10

Plataforma integrada de acoplamiento molecular para el cribado virtual de compuestos bioactivos

Biotecnología Aplicada

2021

Romel Calero Ramos
Romel Calero Ramos

H-Index: 4

Pedro A Valiente
Pedro A Valiente

H-Index: 10

AMDock: a versatile graphical tool for assisting molecular docking with Autodock Vina and Autodock4

Biology direct

2020/12

Pedro A Valiente
Pedro A Valiente

H-Index: 10

Understanding the disrupting mechanism of the Tau aggregation motif “306VQIVYK311” by phenylthiazolyl‐hydrazides inhibitors

Journal of Molecular Recognition

2020/9

Pedro A Valiente
Pedro A Valiente

H-Index: 10

A Method to Calculate the Relative Binding Free Energy Differences of α-Helical Stapled Peptides

The Journal of Organic Chemistry

2020/1/1

Pedro A Valiente
Pedro A Valiente

H-Index: 10

David Becerra
David Becerra

H-Index: 6

See List of Professors in Pedro A Valiente University(University of Toronto)

Co-Authors

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