Patrick Phaneuf
University of California, San Diego
H-index: 12
North America-United States
Top articles of Patrick Phaneuf
BGCFlow: Systematic pangenome workflow for the analysis of biosynthetic gene clusters across large genomic datasets
bioRxiv
2023
Pangenome mining of theStreptomycesgenus redefines their biosynthetic potential
2024/2/22
Reconstructing the transcriptional regulatory network of probiotic L. reuteri is enabled by transcriptomics and machine learning
Msystems
2024/2/13
Jonathan Josephs-Spaulding
H-Index: 4
Akanksha Rajput
H-Index: 9
Gaoyuan Li
H-Index: 2
Patrick Phaneuf
H-Index: 8
Pangenome mining of the Streptomyces genus redefines their biosynthetic potential
bioRxiv
2024
Laboratory evolution, transcriptomics, and modeling reveal mechanisms of paraquat tolerance
Cell reports
2023/9/26
Using the E. coli Alleleome in Strain Design
bioRxiv
2023/9/17
Patrick Phaneuf
H-Index: 8
Whole-genome sequences from wild-type and laboratory-evolved strains define the alleleome and establish its hallmarks
Proceedings of the National Academy of Sciences
2023/4/11
Patrick Phaneuf
H-Index: 8
Jonathan Monk
H-Index: 23
Laboratory evolution reveals general and specific tolerance mechanisms for commodity chemicals
Metabolic Engineering
2023/3/1
1000+ New Complete Genomes Aid Discovery Of Natural Products
2023
Genomic insights into Lactobacillaceae: Analyzing the Alleleome of core pangenomes for enhanced understanding of strain diversity and revealing Phylogroup-specific unique variants
bioRxiv
2023
Pangenome reconstruction of Lactobacillaceae metabolism predicts species-specific metabolic traits
bioRxiv
2023
Data-Driven Strain Design Towards Mitigating Biomanufacturing Stresses
bioRxiv
2023
Lab evolution, transcriptomics, and modeling reveal mechanisms of paraquat tolerance
bioRxiv
2022/12/23
Laboratory evolution of synthetic electron transport system variants reveals a larger metabolic respiratory system and its plasticity
Nature communications
2022/6/27
Laboratory-acquired mutations fall outside the wild-type alleleome of Escherichia coli
bioRxiv
2022/4/6
Escherichia coli Data-Driven Strain Design Using Aggregated Adaptive Laboratory Evolution Mutational Data
ACS Synthetic Biology
2021/11/11
iModulonDB: a knowledgebase of microbial transcriptional regulation derived from machine learning
Nucleic acids research
2021/1/8
Causal mutations from adaptive laboratory evolution are outlined by multiple scales of genome annotations and condition-specificity
BMC genomics
2020/12
The Bitome: digitized genomic features reveal fundamental genome organization
Nucleic Acids Research
2020/10/9
Synthetic cross-phyla gene replacement and evolutionary assimilation of major enzymes
Nature ecology & evolution
2020/10
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