Barış Ekim

Designing efficient randstrobes for sequence similarity analyses

Efficient mapping of accurate long reads in minimizer space with mapquik

Efficient minimizer orders for large values of k using minimum decycling sets

Memory-efficient whole genome assembly of long reads

mapquik: Efficient low-divergence mapping of long reads in minimizer space

Scalable sketching and indexing algorithms for large biological datasets

Minimizer-space de Bruijn graphs: Whole-genome assembly of long reads in minutes on a personal computer

Minimizer-space de Bruijn graphs