Atul Deshpande
Johns Hopkins University
H-index: 9
North America-United States
Top articles of Atul Deshpande
Machine learning integrating spatial omics uncovers humoral immunity patterns in intratumoral tertiary lymphoid structures in pancreatic cancer pathologic responders
Cancer Research
2024/3/22
Integrating spatial multi-omics data with spatial quantitative pharmacology (spQSP) model to simulate human neoadjuvant immunotherapy clinical trial of hepatocellular carcinoma
Cancer Research
2024/3/22
A differential ligand-receptor network inference method to identify alterations in communication between myeloid cells and CD8 T cells in response to PancVAX neo-epitope …
Cancer Research
2024/3/22
Atul Deshpande
H-Index: 5
Abstract B032: Spatial proteomics and transcriptomics reveal early immune cell organization in human pancreatic intraepithelial neoplasia
Cancer Research
2024/1/16
Spatial transcriptomics analysis of neoadjuvant cabozantinib and nivolumab in advanced hepatocellular carcinoma identifies independent mechanisms of resistance and recurrence
Genome medicine
2023/9/18
Shuming Zhang
H-Index: 1
Long Yuan
H-Index: 8
Qingfeng Zhu
H-Index: 15
Atul Deshpande
H-Index: 5
Mark Yarchoan
H-Index: 27
Digitize your Biology! Modeling multicellular systems through interpretable cell behavior
bioRxiv
2023/9/17
Informing virtual clinical trials of hepatocellular carcinoma with spatial multi-omics analysis of a human neoadjuvant immunotherapy clinical trial
bioRxiv
2023/8/15
Uncovering the spatial landscape of molecular interactions within the tumor microenvironment through latent spaces
Cell systems
2023/4/19
Spatial transcriptomics of FFPE pancreatic intraepithelial neoplasias reveals cellular and molecular alterations of progression to pancreatic ductal carcinoma
bioRxiv
2022
Generating colorblind-friendly scatter plots for single-cell data
Elife
2022/12/16
Atul Deshpande
H-Index: 5
1452 Imaging mass cytometry identifies novel natural killer cell interactions in the pancreatic ductal adenocarcinoma tumor microenvironment
2022/11/1
Atul Deshpande
H-Index: 5
Network inference with Granger causality ensembles on single-cell transcriptomics
Cell Reports
2022/2/8
Atul Deshpande
H-Index: 5
Anthony Gitter
H-Index: 14
Community-wide hackathons to identify central themes in single-cell multi-omics
Genome biology
2021/12
Integrating single cell sequencing with a spatial quantitative systems pharmacology model spQSP for personalized prediction of triple-negative breast cancer immunotherapy response
ImmunoInformatics
2021/7/24
Shuming Zhang
H-Index: 1
Chang Gong
H-Index: 10
Hanwen Wang
H-Index: 2
Emily Davis-Marcisak
H-Index: 8
Atul Deshpande
H-Index: 5
Neoadjuvant cabozantinib and nivolumab convert locally advanced hepatocellular carcinoma into resectable disease with enhanced antitumor immunity
Nature Cancer
2021/9
Qingfeng Zhu
H-Index: 15
Shu Zhang
H-Index: 14
Jin He
H-Index: 5
Atul Deshpande
H-Index: 5
Mark Yarchoan
H-Index: 27
From bench to bedside: Single-cell analysis for cancer immunotherapy
2021/8/9
Atul Deshpande
H-Index: 5
Imaging mass cytometry reveals key spatial features among immune cells in hepatocellular carcinomas treated with neoadjuvant cabozantinib and nivolumab
Cancer Research
2021/7/1
Sample preparation compositions, devices, systems and methods
2021/3/11
On simultaneous long-short stock trading controllers with cross-coupling
IFAC-PapersOnLine
2020/1/1
Atul Deshpande
H-Index: 5
Co-Authors
