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Alon Shaiber

Alon Shaiber

University of Chicago

H-index: 18

North America-United States

Contact Alon Shaiber

About Alon Shaiber

Alon Shaiber, With an exceptional h-index of 18 and a recent h-index of 18 (since 2020), a distinguished researcher at University of Chicago, specializes in the field of Microbial Ecology, Microbiome, Metagenomics, Machine Learning.

His recent articles reflect a diverse array of research interests and contributions to the field:

Transient suppression of bacterial populations associated with gut health is critical in success of exclusive enteral nutrition for children with crohn’s disease

Metabolic independence drives gut microbial colonization and resilience in health and disease

High molecular weight DNA extraction strategies for long‐read sequencing of complex metagenomes

Genomic instability is enriched in localized prostate cancers from men of African ancestry.

System-wide transcriptome damage and tissue identity loss in COVID-19 patients

Community-led, integrated, reproducible multi-omics with anvi’o. Nat Microbiol 6: 3–6

Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions

Systemic tissue and cellular disruption from SARS-CoV-2 infection revealed in COVID-19 autopsies and spatial omics tissue maps

Alon Shaiber Information

University

Position

PhD Candidate

Citations(all)

2095

Citations(since 2020)

2041

Cited By

540

hIndex(all)

18

hIndex(since 2020)

18

i10Index(all)

20

i10Index(since 2020)

20

Email

University Profile Page

Google Scholar

Alon Shaiber Skills & Research Interests

Microbial Ecology

Microbiome

Metagenomics

Machine Learning

Top articles of Alon Shaiber

Transient suppression of bacterial populations associated with gut health is critical in success of exclusive enteral nutrition for children with crohn’s disease

2023/7/1

Alon Shaiber
Alon Shaiber

H-Index: 12

Ritu Verma
Ritu Verma

H-Index: 6

Metabolic independence drives gut microbial colonization and resilience in health and disease

Genome biology

2023/4/17

Florian Trigodet
Florian Trigodet

H-Index: 2

Alon Shaiber
Alon Shaiber

H-Index: 12

Sonny Tm Lee
Sonny Tm Lee

H-Index: 7

Dina Kao
Dina Kao

H-Index: 22

Bana Jabri
Bana Jabri

H-Index: 48

High molecular weight DNA extraction strategies for long‐read sequencing of complex metagenomes

Molecular ecology resources

2022/7

Florian Trigodet
Florian Trigodet

H-Index: 2

Alon Shaiber
Alon Shaiber

H-Index: 12

Luis Barreiro
Luis Barreiro

H-Index: 40

Bana Jabri
Bana Jabri

H-Index: 48

Genomic instability is enriched in localized prostate cancers from men of African ancestry.

2022/2/20

Yajas Shah
Yajas Shah

H-Index: 2

Alon Shaiber
Alon Shaiber

H-Index: 12

Olivier Elemento
Olivier Elemento

H-Index: 70

Marcin Imielinski
Marcin Imielinski

H-Index: 42

System-wide transcriptome damage and tissue identity loss in COVID-19 patients

Cell Reports Medicine

2022/2/15

David C Danko
David C Danko

H-Index: 8

Daniel J Butler
Daniel J Butler

H-Index: 5

Alon Shaiber
Alon Shaiber

H-Index: 12

Matthew Mackay
Matthew Mackay

H-Index: 12

Urminder Singh
Urminder Singh

H-Index: 6

Nicholas P Tatonetti
Nicholas P Tatonetti

H-Index: 31

Sagi Shapira
Sagi Shapira

H-Index: 14

Hanna Rennert
Hanna Rennert

H-Index: 20

Olivier Elemento
Olivier Elemento

H-Index: 70

Marcin Imielinski
Marcin Imielinski

H-Index: 42

Cem Meydan
Cem Meydan

H-Index: 20

Community-led, integrated, reproducible multi-omics with anvi’o. Nat Microbiol 6: 3–6

Nature microbiology

2021

Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions

Nature communications

2021/3/12

Daniel Butler
Daniel Butler

H-Index: 19

Cem Meydan
Cem Meydan

H-Index: 20

Alon Shaiber
Alon Shaiber

H-Index: 12

Matthew Mackay
Matthew Mackay

H-Index: 12

Maria Sierra
Maria Sierra

H-Index: 10

Michael Zietz
Michael Zietz

H-Index: 4

Chandrima Bhattacharya
Chandrima Bhattacharya

H-Index: 4

Michael Bailey
Michael Bailey

H-Index: 0

Dmitry Meleshko
Dmitry Meleshko

H-Index: 11

Dong Xu
Dong Xu

H-Index: 42

Ying Chen
Ying Chen

H-Index: 6

Sagi Shapira
Sagi Shapira

H-Index: 14

Massimo Loda
Massimo Loda

H-Index: 76

Hanna Rennert
Hanna Rennert

H-Index: 20

Marcin Imielinski
Marcin Imielinski

H-Index: 42

Systemic tissue and cellular disruption from SARS-CoV-2 infection revealed in COVID-19 autopsies and spatial omics tissue maps

bioRxiv

2021/3/9

Daniel J Butler
Daniel J Butler

H-Index: 5

Alon Shaiber
Alon Shaiber

H-Index: 12

Matthew Mackay
Matthew Mackay

H-Index: 12

Urminder Singh
Urminder Singh

H-Index: 6

Sagi Shapira
Sagi Shapira

H-Index: 14

Massimo Loda
Massimo Loda

H-Index: 76

Hanna Rennert
Hanna Rennert

H-Index: 20

Olivier Elemento
Olivier Elemento

H-Index: 70

Marcin Imielinski
Marcin Imielinski

H-Index: 42

Cem Meydan
Cem Meydan

H-Index: 20

Adaptive ecological processes and metabolic independence drive microbial colonization and resilience in the human gut

bioRxiv

2021/3/3

Florian Trigodet
Florian Trigodet

H-Index: 2

Alon Shaiber
Alon Shaiber

H-Index: 12

Sonny Tm Lee
Sonny Tm Lee

H-Index: 7

Bana Jabri
Bana Jabri

H-Index: 48

Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome

Genome biology

2020/12

Alon Shaiber
Alon Shaiber

H-Index: 12

Mahmoud Yousef
Mahmoud Yousef

H-Index: 2

Sonny Tm Lee
Sonny Tm Lee

H-Index: 7

Distinct classes of complex structural variation uncovered across thousands of cancer genome graphs

Cell

2020/10/1

Xiaotong Yao
Xiaotong Yao

H-Index: 9

Aditya Deshpande
Aditya Deshpande

H-Index: 7

Alon Shaiber
Alon Shaiber

H-Index: 12

Zoran Gajic
Zoran Gajic

H-Index: 19

Kanika Arora
Kanika Arora

H-Index: 7

Mahmoud Ghandi
Mahmoud Ghandi

H-Index: 24

Franklin Huang
Franklin Huang

H-Index: 22

Rameen Beroukhim
Rameen Beroukhim

H-Index: 115

Brian J Reid
Brian J Reid

H-Index: 27

Xiaohong Li
Xiaohong Li

H-Index: 2

Olivier Elemento
Olivier Elemento

H-Index: 70

Marcin Imielinski
Marcin Imielinski

H-Index: 42

Shotgun transcriptome and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions

BioRxiv

2020/4/20

Daniel J Butler
Daniel J Butler

H-Index: 5

Cem Meydan
Cem Meydan

H-Index: 20

Alon Shaiber
Alon Shaiber

H-Index: 12

Matthew Mackay
Matthew Mackay

H-Index: 12

Maria Sierra
Maria Sierra

H-Index: 10

Michael Zietz
Michael Zietz

H-Index: 4

Chandrima Bhattacharya
Chandrima Bhattacharya

H-Index: 4

Dmitry Meleshko
Dmitry Meleshko

H-Index: 11

Dong Xu
Dong Xu

H-Index: 42

Massimo Loda
Massimo Loda

H-Index: 76

Marcin Imielinski
Marcin Imielinski

H-Index: 42

Hanna Rennert
Hanna Rennert

H-Index: 20

Host, viral, and environmental transcriptome profiles of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)

bioRxiv

2020/4/20

Daniel J Butler
Daniel J Butler

H-Index: 5

Cem Meydan
Cem Meydan

H-Index: 20

Alon Shaiber
Alon Shaiber

H-Index: 12

Matthew Mackay
Matthew Mackay

H-Index: 12

Maria Sierra
Maria Sierra

H-Index: 10

Michael Zietz
Michael Zietz

H-Index: 4

Chandrima Bhattacharya
Chandrima Bhattacharya

H-Index: 4

Dmitry Meleshko
Dmitry Meleshko

H-Index: 11

Dong Xu
Dong Xu

H-Index: 42

Massimo Loda
Massimo Loda

H-Index: 76

Marcin Imielinski
Marcin Imielinski

H-Index: 42

Hanna Rennert
Hanna Rennert

H-Index: 20

Accurate and complete genomes from metagenomes

2020/3/1

Karthik Anantharaman
Karthik Anantharaman

H-Index: 30

Alon Shaiber
Alon Shaiber

H-Index: 12

High-resolution Microbial'Omics at Scale to Illuminate Enigmatic and Rather Picky Microbial Residents of the Human Oral Cavity

2020

Alon Shaiber
Alon Shaiber

H-Index: 12

See List of Professors in Alon Shaiber University(University of Chicago)